Rroxscaffold_7G00197660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000335
Physical Location & Seq
Forward (+)
41989675 .. 41992177
2503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197660.1

Sequence Viewer

Length: 1221 bp
ATGCGTGAATCACCGAAGAGTTCGATGGATACCTTCATATATGAATTCGGGGAGGAGCTACGATTGTTAAGGGGTTCATTGCAATCTCCAGCAAGCCAAGTTGATAACCCACTCGAAGTTTGGCTCTCCGTCGCCGTCGTCAACACCCGAGTCGATTCCGCCGCAACCGAGGCTTCTTCATCACTTATTCATGCCGATAATGGTATTATTTGTAAAACGCCCGTGGATAGTGATTTGAATTTGTCTTCCATTGATGTGATATTGGGATTTTGTGATAATGCTAGTATGAATCATGTTGCGGGCAGTACAACTATTGATTCAATTGCTACATTAGTTTGTGGTGATAAAAGTATGGAAGTCGTGGGTGGTGTTAATACTAGTTGGGAAAATGATAACAAAAGTGTTACGATGGATTCAACCCGTATGAAAATGATAACAAAAGTGTTACGCAAACCCTTGTCGCCAACAACTTGGGGACAAATAGTTTCTTTGAGGTTTGACACTGCGATGATTTATTTGCTGATTCCAAATGTAAAGCTCATCTTCATTATTGATGGAATGACCCACAACAATTTAAACCGTGCTGCTCTACCTATTGCTTTATGGTCTCCTCAAATGTGCAAGGACATAGATCAGTTACAAACCCACAAGTACAATAATCATTACACTTGTAGTGGGTGTCATTTCGAGAATATAAATGACCAAACTAAAGCCATCTCTCAGCCAAGGAGTTTCTCTATTGATGAAATTATTGATATTCTCCAAATCAATTTAGAGTTTTCATCTTCAAGGTACTCTTCTGATCCACTTGTTTCCATATGTTATGGTGTAGTTCTTATGCCTAATATGCACAAGTTTTCTCAATACATGGTGGGGCATGTTCATAAGGATGATTATTTCTTGGCAACGAGCTCTTCAAATTTTTATTCATCAGTCCATGCAATCCATGCACTTGTAAGGAAATTGTTTCCTTTATCACCTATGGCTGCTATACGACCTCTTTTGGTCAACATGATAAGAGAAGATGCACACCGTATCCGTGGAATTATGCTAGTTATTTCTATGATTGAGCTGGTGTCTTTGAAGTCTAAGAAACAAGGCTTTGAAATTATGTATGGTGATGTTTCCGATGGAAATTATTATCTTGCATTGGTTCCTCAAAATTTCTTTTCAGTACCCATGCGGTCAAATGAAGCTCCTCTCGCTTATCTTGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.31

Weight (kDa)

5.83

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 159, 162, 299, 1183
AclWI GGATC 1 cut(s) 797
AcsI RAATTY 4 cut(s) 44, 238, 919, 1162
AfaI GTAC 4 cut(s) 307, 653, 794, 1176
AgsI TTSAA 7 cut(s) 238, 321, 417, 789, 918, 1084, 1106
AhlI ACTAGT 1 cut(s) 377
AluBI AGCT 5 cut(s) 58, 538, 912, 1072, 1196
AluI AGCT 5 cut(s) 58, 538, 912, 1072, 1196
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 1 cut(s) 612
AlwI GGATC 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 584, 986
ApoI RAATTY 4 cut(s) 44, 238, 919, 1162
AsuHPI GGTGA 4 cut(s) 3, 353, 969, 1130
AvaI CYCGRG 1 cut(s) 147
BanII GRGCYC 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 2 cut(s) 571, 973
BccI CCATC 5 cut(s) 19, 403, 548, 722, 1124
BceAI ACGGC 1 cut(s) 119
BciVI GTATCC 2 cut(s) 22, 1046
BcoDI GTCTC 1 cut(s) 612
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 4 cut(s) 282, 378, 1052, 1219
BfuI GTATCC 2 cut(s) 22, 1046
BisI GCNGC 3 cut(s) 162, 585, 987
BlsI GCNGC 3 cut(s) 163, 586, 988
BmeT110I CYCGRG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 1155
BmsI GCATC 1 cut(s) 1015
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 4 cut(s) 168, 222, 725, 1039
Bse3DI GCAATG 1 cut(s) 77
BseDI CCNNGG 4 cut(s) 168, 222, 725, 1039
BseGI GGATG 1 cut(s) 895
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 734
BseRI GAGGAG 3 cut(s) 68, 600, 1188
BseXI GCAGC 2 cut(s) 571, 973
BsiHKAI GWGCWC 1 cut(s) 914
BsiHKCI CYCGRG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 612
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 914
Bsp143I GATC 2 cut(s) 631, 802
BspACI CCGC 4 cut(s) 159, 162, 299, 1183
BspCNI CTCAG 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 1155
BspPI GGATC 1 cut(s) 797
BspQI GCTCTTC 1 cut(s) 919
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 77
BssECI CCNNGG 4 cut(s) 168, 222, 725, 1039
BssMI GATC 2 cut(s) 631, 802
BssT1I CCWWGG 1 cut(s) 725
Bst4CI ACNGT 2 cut(s) 581, 1034
Bst6I CTCTTC 3 cut(s) 11, 802, 919
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 2 cut(s) 94, 301
BstDEI CTNAG 2 cut(s) 720, 1089
BstDSI CCRYGG 2 cut(s) 222, 1039
BstF5I GGATG 1 cut(s) 895
BstKTI GATC 2 cut(s) 634, 805
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 2 cut(s) 631, 802
BstMWI GCNNNNNNNGC 4 cut(s) 170, 847, 947, 1202
BstNSI RCATGY 1 cut(s) 881
BstV1I GCAGC 2 cut(s) 571, 973
BstV2I GAAGAC 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 471
BsuI GTATCC 2 cut(s) 22, 1046
BtgI CCRYGG 2 cut(s) 222, 1039
BtgZI GCGATG 1 cut(s) 521
BtsCI GGATG 1 cut(s) 895
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 501
Cac8I GCNNGC 2 cut(s) 94, 301
Csp6I GTAC 4 cut(s) 306, 652, 793, 1175
CviAII CATG 8 cut(s) 191, 293, 868, 878, 938, 947, 1012, 1180
CviQI GTAC 4 cut(s) 306, 652, 793, 1175
DdeI CTNAG 2 cut(s) 720, 1089
DpnI GATC 2 cut(s) 633, 804
DpnII GATC 2 cut(s) 631, 802
DraI TTTAAA 1 cut(s) 576
Eam1104I CTCTTC 3 cut(s) 11, 802, 919
EarI CTCTTC 3 cut(s) 11, 802, 919
EciI GGCGGA 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 725
Eco24I GRGCYC 1 cut(s) 914
Eco31I GGTCTC 1 cut(s) 612
Eco53kI GAGCTC 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 912
EcoRI GAATTC 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 725
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 8 cut(s) 194, 296, 871, 881, 941, 950, 1015, 1183
FalI AAGNNNNNCTT 4 cut(s) 527, 559, 781, 813
FaqI GGGAC 1 cut(s) 489
FatI CATG 8 cut(s) 190, 292, 867, 877, 937, 946, 1011, 1179
FauI CCCGC 1 cut(s) 292
FauNDI CATATG 1 cut(s) 818
Fnu4HI GCNGC 3 cut(s) 162, 585, 987
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 3 cut(s) 162, 585, 987
FspBI CTAG 4 cut(s) 282, 378, 1052, 1219
GluI GCNGC 3 cut(s) 162, 585, 987
GsuI CTGGAG 1 cut(s) 72
Hin1II CATG 8 cut(s) 194, 296, 871, 881, 941, 950, 1015, 1183
HincII GTYRAC 2 cut(s) 142, 1009
HindII GTYRAC 2 cut(s) 142, 1009
HinfI GANTC 7 cut(s) 8, 150, 155, 289, 317, 413, 523
HphI GGTGA 4 cut(s) 3, 353, 969, 1130
Hpy166II GTNNAC 2 cut(s) 142, 1009
Hpy188I TCNGA 2 cut(s) 802, 1129
Hpy188III TCNNGA 2 cut(s) 688, 1211
Hpy8I GTNNAC 2 cut(s) 142, 1009
Hpy99I CGWCG 2 cut(s) 134, 140
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 581, 1034
HpyCH4V TGCA 7 cut(s) 82, 621, 850, 941, 950, 1028, 1148
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 847, 947, 1202
HpyF3I CTNAG 2 cut(s) 720, 1089
Hsp92II CATG 8 cut(s) 194, 296, 871, 881, 941, 950, 1015, 1183
Kzo9I GATC 2 cut(s) 631, 802
LguI GCTCTTC 1 cut(s) 919
LmnI GCTCC 2 cut(s) 55, 1201
LpnPI CCDG 2 cut(s) 102, 1058
Lsp1109I GCAGC 2 cut(s) 571, 973
LweI GCATC 1 cut(s) 1015
MaeI CTAG 4 cut(s) 282, 378, 1052, 1219
MaeIII GTNAC 3 cut(s) 403, 444, 636
MalI GATC 2 cut(s) 633, 804
MboI GATC 2 cut(s) 631, 802
MboII GAAGA 8 cut(s) 28, 168, 237, 535, 777, 789, 906, 1034
MfeI CAATTG 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 914
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 7 cut(s) 46, 163, 486, 621, 1008, 1167, 1209
MseI TTAA 3 cut(s) 68, 372, 575
MslI CAYNNNNRTG 3 cut(s) 254, 506, 888
MunI CAATTG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 170, 847, 947, 1202
NdeI CATATG 1 cut(s) 818
NdeII GATC 2 cut(s) 631, 802
NlaIII CATG 8 cut(s) 194, 296, 871, 881, 941, 950, 1015, 1183
NlaIV GGNNCC 1 cut(s) 1155
NspI RCATGY 1 cut(s) 881
PciSI GCTCTTC 1 cut(s) 919
PfeI GAWTC 6 cut(s) 8, 155, 289, 317, 413, 523
PkrI GCNGC 3 cut(s) 163, 586, 988
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 914
PspN4I GGNNCC 1 cut(s) 1155
RsaI GTAC 4 cut(s) 307, 653, 794, 1176
RsaNI GTAC 4 cut(s) 306, 652, 793, 1175
RseI CAYNNNNRTG 3 cut(s) 254, 506, 888
SacI GAGCTC 1 cut(s) 914
SapI GCTCTTC 1 cut(s) 919
SaqAI TTAA 3 cut(s) 68, 372, 575
SatI GCNGC 3 cut(s) 162, 585, 987
Sau3AI GATC 2 cut(s) 631, 802
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 1 cut(s) 1015
SmiMI CAYNNNNRTG 3 cut(s) 254, 506, 888
SpeI ACTAGT 1 cut(s) 377
SsiI CCGC 4 cut(s) 159, 162, 299, 1183
SspMI CTAG 4 cut(s) 282, 378, 1052, 1219
SstI GAGCTC 1 cut(s) 914
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 2 cut(s) 581, 1034
TaqI TCGA 4 cut(s) 23, 114, 153, 687
TatI WGTACW 2 cut(s) 305, 651
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 6 cut(s) 8, 155, 289, 317, 413, 523
Tru1I TTAA 3 cut(s) 68, 372, 575
Tru9I TTAA 3 cut(s) 68, 372, 575
TscAI CASTG 1 cut(s) 508
TseI GCWGC 2 cut(s) 584, 986
TspGWI ACGGA 2 cut(s) 118, 1028
TspRI CASTG 1 cut(s) 508
XapI RAATTY 4 cut(s) 44, 238, 919, 1162
XceI RCATGY 1 cut(s) 881
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 4 cut(s) 282, 378, 1052, 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.