Rroxscaffold_3G00258980

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000335
Physical Location & Seq
Forward (+)
53382594 .. 53383676
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258980.1

Sequence Viewer

Length: 1083 bp
ATGGACAATTGTGAGGAGCTGATGCCGGAGTACCTTGGATTTGTGAAGGGTGTTGTGGATTCCGATGATCTGCCGCTCAACATTTCGCGTGAGATGCTGCAACAGAACAAGATTCTCAAGGTGATTAGGAAGAATCTGGTGAAGAAGTGCCTCGAGATGTTCAATGAGGTTGCAGAGAATAAGGAGGAGTATACTAAATTCTATGAGGCTTTCTCGAAGAACCTCAAGTTGGGTATCCATGAGGACAGCCAGAACAGGGCGAAGCTGGCTGATTTGCTCAGGTACTACTCTACCAAAAGCACTGATGAGATGACCAGCTTTAAGGACTATGTCACGAGGATGAAGGAGGGCCAGAAGAACATCTACTACATCACTGGTGAGGGCAAGAAGGCTGTCGAGAACTCGCCGTTTCTGGAGAGGCTTAAGAAGAAGGGATATGAGGTGTTGTTTATGGTTGAGCCGATTGATGAGTATGCTGTTGGACAGTTGAAGGAGTATGATGGGAAGAAGCTTGTGTCTGTAACGAAAGAAGGGCTTCAGCTTGAGGATGAGTCGGAGGAGGAGAAGAAGCAGAGAGAGGAGAAGAAGAAGTCGTTTGAGAAGCTGTGCAAGAAGACCAAGGAGATTCTTGGGGATAGGGTGCAGAAGGTGGTGGTTTCTGACAGAGTTGTCGACTCACCTTGTGTCTTGGTGACTGGAGAGTATGGGTGGACAGCTAACATGGAGAGAATTATGAAAGCTCAGGCTTTGAGGGACAACAGCATGGGAGCTTACATGTCTAGCAAGAAGACTCTGGAGATTAATCCCGACAATCCTATAGTGGAGGAGCTGAGGAAGAGGGTCGAGACTGATGAGAATGATAAGTCGGTGAAGGACCTTGTGCTGCTGCTCTATGAGACCGCTCTGTTGAGTTCGGGGTTCAGCCTTGATGATCCCAACAGGTTTGCTGGGAGGATTCACAGGATGCTGAAACTGGGTCTCAGCATTGATGAAGATGATGACCCTGAACTAGTTGATGATGTCGACATGCCTCCATCGGAGGAGAATAAGGTTGAGGAAAGCCAGATGGAAGAAGTTGACTGA

Protein Analysis

360

Amino Acids

41.6

Weight (kDa)

4.93

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 1 - 352 8e-168 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 668
AccBSI CCGCTC 2 cut(s) 76, 902
AccI GTMKAC 3 cut(s) 191, 672, 1023
AccII CGCG 1 cut(s) 88
AciI CCGC 2 cut(s) 74, 900
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 521
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 2 cut(s) 32, 284
AfiI CCNNNNNNNGG 2 cut(s) 229, 256
AflII CTTAAG 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 2 cut(s) 163, 490
AhlI ACTAGT 1 cut(s) 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
Alw26I GTCTC 3 cut(s) 839, 890, 983
AlwI GGATC 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 97, 883, 886
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 801
Asp700I GAANNNNTTC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 349, 874
AsuHPI GGTGA 6 cut(s) 133, 151, 389, 669, 703, 880
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 874
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BauI CACGAG 1 cut(s) 334
BbsI GAAGAC 2 cut(s) 620, 794
BbvCI CCTCAGC 1 cut(s) 830
BbvI GCAGC 3 cut(s) 84, 870, 873
BccI CCATC 3 cut(s) 494, 1042, 1060
BceAI ACGGC 1 cut(s) 391
BciVI GTATCC 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 839, 890, 983
BcuI ACTAGT 1 cut(s) 1009
BfaI CTAG 2 cut(s) 780, 1010
BfmI CTRYAG 1 cut(s) 816
BfrI CTTAAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 4 cut(s) 74, 98, 884, 887
BlsI GCNGC 4 cut(s) 75, 99, 885, 888
Bme18I GGWCC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 349, 874
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 3 cut(s) 12, 84, 954
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 2 cut(s) 620, 794
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 3 cut(s) 434, 717, 815
Bpu10I CCTNAGC 3 cut(s) 278, 741, 830
BpuEI CTTGAG 3 cut(s) 101, 209, 563
BsaI GGTCTC 2 cut(s) 890, 983
BsaJI CCNNGG 2 cut(s) 34, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 256
Bse1I ACTGG 3 cut(s) 379, 700, 978
BseDI CCNNGG 2 cut(s) 34, 618
BseGI GGATG 3 cut(s) 345, 553, 969
BseLI CCNNNNNNNGG 2 cut(s) 229, 256
BseMII CTCAG 4 cut(s) 292, 755, 821, 994
BseNI ACTGG 3 cut(s) 379, 700, 978
BseRI GAGGAG 7 cut(s) 29, 200, 572, 575, 593, 839, 1055
BseXI GCAGC 3 cut(s) 84, 870, 873
BseYI CCCAGC 1 cut(s) 947
BsgI GTGCAG 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 2 cut(s) 229, 256
BsmAI GTCTC 3 cut(s) 839, 890, 983
BsmFI GGGAC 1 cut(s) 767
BsnI GGCC 1 cut(s) 351
Bso31I GGTCTC 2 cut(s) 890, 983
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 2 cut(s) 67, 931
BspACI CCGC 2 cut(s) 74, 900
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 4 cut(s) 291, 754, 822, 993
BspFNI CGCG 1 cut(s) 88
BspPI GGATC 1 cut(s) 926
BspTI CTTAAG 1 cut(s) 422
BspTNI GGTCTC 2 cut(s) 890, 983
BsrBI CCGCTC 2 cut(s) 76, 902
BsrI ACTGG 3 cut(s) 379, 700, 978
BssECI CCNNGG 2 cut(s) 34, 618
BssMI GATC 2 cut(s) 67, 931
BssNAI GTATAC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 334
BssT1I CCWWGG 2 cut(s) 34, 618
Bst1107I GTATAC 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 830
BstAFI CTTAAG 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 4 cut(s) 278, 741, 830, 980
BstF5I GGATG 3 cut(s) 345, 553, 969
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 2 cut(s) 70, 934
BstMAI GTCTC 3 cut(s) 839, 890, 983
BstMBI GATC 2 cut(s) 67, 931
BstMWI GCNNNNNNNGC 2 cut(s) 94, 266
BstNSI RCATGY 2 cut(s) 778, 1030
BstSFI CTRYAG 1 cut(s) 816
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 84, 870, 873
BstV2I GAAGAC 2 cut(s) 620, 794
BstZ17I GTATAC 1 cut(s) 192
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 345, 553, 969
BtsIMutI CAGTG 2 cut(s) 300, 372
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 349, 874
Csp6I GTAC 2 cut(s) 31, 283
CviAII CATG 5 cut(s) 239, 721, 763, 775, 1027
CviQI GTAC 2 cut(s) 31, 283
DdeI CTNAG 4 cut(s) 278, 741, 830, 980
DpnI GATC 2 cut(s) 69, 933
DpnII GATC 2 cut(s) 67, 931
DraIII CACNNNGTG 1 cut(s) 683
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
Eam1104I CTCTTC 1 cut(s) 830
EarI CTCTTC 1 cut(s) 830
Eco130I CCWWGG 2 cut(s) 34, 618
Eco31I GGTCTC 2 cut(s) 890, 983
Eco47I GGWCC 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 874
EcoT14I CCWWGG 2 cut(s) 34, 618
ErhI CCWWGG 2 cut(s) 34, 618
FaeI CATG 5 cut(s) 242, 724, 766, 778, 1030
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 767
FatI CATG 5 cut(s) 238, 720, 762, 774, 1026
FblI GTMKAC 3 cut(s) 191, 672, 1023
Fnu4HI GCNGC 4 cut(s) 74, 98, 884, 887
FokI GGATG 3 cut(s) 352, 560, 976
Fsp4HI GCNGC 4 cut(s) 74, 98, 884, 887
FspBI CTAG 2 cut(s) 780, 1010
GluI GCNGC 4 cut(s) 74, 98, 884, 887
GsaI CCCAGC 1 cut(s) 951
GsuI CTGGAG 3 cut(s) 434, 717, 815
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 26
Hin1II CATG 5 cut(s) 242, 724, 766, 778, 1030
HincII GTYRAC 3 cut(s) 673, 1024, 1078
HindII GTYRAC 3 cut(s) 673, 1024, 1078
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 8 cut(s) 59, 112, 133, 551, 625, 674, 790, 955
HpaII CCGG 1 cut(s) 26
HphI GGTGA 6 cut(s) 133, 151, 389, 669, 703, 880
Hpy166II GTNNAC 5 cut(s) 192, 673, 711, 1024, 1078
Hpy188I TCNGA 4 cut(s) 64, 556, 661, 1039
Hpy188III TCNNGA 8 cut(s) 154, 214, 334, 397, 413, 794, 806, 844
Hpy8I GTNNAC 5 cut(s) 192, 673, 711, 1024, 1078
HpyAV CCTTC 8 cut(s) 40, 337, 382, 424, 484, 524, 640, 865
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4V TGCA 4 cut(s) 100, 173, 609, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 266
HpyF3I CTNAG 4 cut(s) 278, 741, 830, 980
Hsp92II CATG 5 cut(s) 242, 724, 766, 778, 1030
Kzo9I GATC 2 cut(s) 67, 931
LmnI GCTCC 3 cut(s) 16, 767, 826
Lsp1109I GCAGC 3 cut(s) 84, 870, 873
LweI GCATC 3 cut(s) 12, 84, 954
MaeI CTAG 2 cut(s) 780, 1010
MaeIII GTNAC 3 cut(s) 331, 520, 691
MalI GATC 2 cut(s) 69, 933
MbiI CCGCTC 2 cut(s) 76, 902
MboI GATC 2 cut(s) 67, 931
MfeI CAATTG 1 cut(s) 7
MluCI AATT 3 cut(s) 7, 197, 729
MlyI GAGTC 3 cut(s) 560, 668, 784
MmeI TCCRAC 2 cut(s) 460, 534
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 3 cut(s) 321, 423, 801
MslI CAYNNNNRTG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 7
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 94, 266
NdeII GATC 2 cut(s) 67, 931
NlaIII CATG 5 cut(s) 242, 724, 766, 778, 1030
NmuCI GTSAC 2 cut(s) 331, 691
NspI RCATGY 2 cut(s) 778, 1030
PaeR7I CTCGAG 1 cut(s) 152
PciI ACATGT 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 5 cut(s) 59, 112, 133, 625, 955
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 75, 99, 885, 888
PleI GAGTC 3 cut(s) 559, 668, 784
PpsI GAGTC 3 cut(s) 559, 668, 784
PpuMI RGGWCCY 1 cut(s) 874
PscI ACATGT 1 cut(s) 774
PshBI ATTAAT 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 874
PspFI CCCAGC 1 cut(s) 947
PspPI GGNCC 2 cut(s) 349, 874
PspPPI RGGWCCY 1 cut(s) 874
PsrI GAACNNNNNNTAC 2 cut(s) 350, 382
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 2 cut(s) 32, 284
RsaNI GTAC 2 cut(s) 31, 283
RseI CAYNNNNRTG 1 cut(s) 338
SalI GTCGAC 2 cut(s) 671, 1022
SaqAI TTAA 3 cut(s) 321, 423, 801
SatI GCNGC 4 cut(s) 74, 98, 884, 887
Sau3AI GATC 2 cut(s) 67, 931
Sau96I GGNCC 2 cut(s) 349, 874
SchI GAGTC 3 cut(s) 560, 668, 784
SfaNI GCATC 3 cut(s) 12, 84, 954
SfcI CTRYAG 1 cut(s) 816
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 1 cut(s) 874
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 5 cut(s) 116, 152, 224, 422, 542
SmoI CTYRAG 5 cut(s) 116, 152, 224, 422, 542
SpeI ACTAGT 1 cut(s) 1009
Sse9I AATT 3 cut(s) 7, 197, 729
SsiI CCGC 2 cut(s) 74, 900
SspMI CTAG 2 cut(s) 780, 1010
StyI CCWWGG 2 cut(s) 34, 618
TaaI ACNGT 1 cut(s) 486
TaqI TCGA 6 cut(s) 153, 215, 396, 672, 843, 1023
TasI AATT 3 cut(s) 7, 197, 729
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 5 cut(s) 59, 112, 133, 625, 955
Tru1I TTAA 3 cut(s) 321, 423, 801
Tru9I TTAA 3 cut(s) 321, 423, 801
TscAI CASTG 2 cut(s) 307, 379
TseFI GTSAC 2 cut(s) 331, 691
TseI GCWGC 3 cut(s) 97, 883, 886
Tsp45I GTSAC 2 cut(s) 331, 691
TspDTI ATGAA 3 cut(s) 356, 749, 1005
TspRI CASTG 2 cut(s) 307, 379
Tth111I GACNNNGTC 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 874
VspI ATTAAT 1 cut(s) 801
XapI RAATTY 1 cut(s) 197
XceI RCATGY 2 cut(s) 778, 1030
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 3 cut(s) 191, 672, 1023
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 2 cut(s) 780, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.