Rroxscaffold_7G00194220

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
35986687 .. 35988858
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194220.1

Sequence Viewer

Length: 1083 bp
ATGATGATGAACAACTGTGAAGAGCTCATCCCAGAGTATCTTGGATTCGTTAAGGGCGTTGTGGACTCTGATGATTTGCCACTCAACATCTCCCGTGAGATGCTTCAACAGAACAAGATTTTGAAGGTGATCAGGAAGAACCTTGTGAAGAAGTGCATTGAGATGTTCAATGAGATTGCTGAAAACAAAGAGGATTACACCAAGTTTTATGAGGCATTCTCCAAGAACTTGAAGTTGGGTATTCATGAAGACAGCCAGAACAGAGCCAAATTGGCTGACCTTCTCCGGTACCATTCCACCAAGAGCGGCGAGGACCTGACAAGCCTGAAGGACTATGTTACCAGAATGAAGGAGGGCCAAAAGGACATTTACTACATTACTGGTGAGAGCAAGAAAGCAGTGGAGAATTCTCCATTCTTGGAGCGCCTCAAGAAAAAAGGATATGAAGTGCTTTTCATGGTGGATGCAATCGATGAGTATGCTGTAGGTCAGTTGAAGGAGTATGATGGCAAGAAGTTGGTGTCCGCCACAAAGGAAGGATTGAAGCTTGATGATGAAACTGAGGAAGAGAAGCAGAAGAGAGAGGAGAAGAAGAAATCCTTTGAGAATCTTTGCAAGACAATCAAGGACATTTTGGGAGATCGGATTGAGAAGGTAGTAGTATCTGACAGAATTGTGGATTCGCCGTGCTGCTTGGTGACGGGTGAATATGGCTGGACTGCGAATATGGAGAGGATCATGAAGGCTCAGGCTCTCAGGGACAACAGCATGGGATCCTACATGTCTAGCAAGAAGACAATGGAAATCAATCCAGATAATGGAATCATGGAGGAGTTGAGGAAGAGGGCCGAAGCTGATAAGAATGACAAGTCTGTCAAGGACCTTGTGTTGCTGTTGTTCGAGACTGCCCTCTTGACATCCGGATTCAGCTTGGATGATCCCAACACTTTTGCGGCAAGAATCAACAGGATGTTAAAGCTGGGCCTCAGCATTGATGAGGATGAGGCAGCTGGTGAAGATGCAGATATGCCTGCTTTGGAGGACGATGCTGCTGAAGAGAGCAAGATGGAGGAGGTCGACTAA

Protein Analysis

360

Amino Acids

41.13

Weight (kDa)

4.9

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 2 - 355 6e-168 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
Acc65I GGTACC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 818
AccBSI CCGCTC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 1077
AccIII TCCGGA 1 cut(s) 920
AciI CCGC 3 cut(s) 306, 525, 953
AclWI GGATC 4 cut(s) 743, 768, 781, 932
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 2 cut(s) 347, 1074
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 6 cut(s) 107, 124, 169, 232, 496, 544
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 6 cut(s) 25, 547, 854, 930, 979, 1010
AluI AGCT 6 cut(s) 25, 547, 854, 930, 979, 1010
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 896
AlwI GGATC 4 cut(s) 743, 768, 781, 932
Aor13HI TCCGGA 1 cut(s) 920
AoxI GGCC 3 cut(s) 355, 846, 982
ApeKI GCWGC 3 cut(s) 690, 1007, 1049
ApoI RAATTY 1 cut(s) 406
Asp718I GGTACC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 5 cut(s) 313, 355, 846, 880, 982
AsuHPI GGTGA 5 cut(s) 139, 395, 709, 716, 1025
AvaII GGWCC 2 cut(s) 313, 880
BamHI GGATCC 1 cut(s) 773
BanI GGYRCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 255, 800
Bbv12I GWGCWC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 986
BbvI GCAGC 3 cut(s) 677, 1019, 1036
BccI CCATC 2 cut(s) 500, 1060
BceAI ACGGC 1 cut(s) 670
BcgI CGANNNNNNTGC 2 cut(s) 461, 495
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 896
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 427
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 5 cut(s) 307, 691, 954, 1008, 1050
BlsI GCNGC 5 cut(s) 308, 692, 955, 1009, 1051
Bme18I GGWCC 2 cut(s) 313, 880
BmgT120I GGNCC 5 cut(s) 313, 355, 846, 880, 982
BmiI GGNNCC 2 cut(s) 290, 775
BmsI GCATC 4 cut(s) 90, 454, 1009, 1036
BpiI GAAGAC 2 cut(s) 255, 800
BplI GAGNNNNNCTC 2 cut(s) 203, 235
Bpu10I CCTNAGC 2 cut(s) 747, 986
BpuEI CTTGAG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 471
BsaWI WCCGGW 2 cut(s) 285, 920
Bsc4I CCNNNNNNNGG 1 cut(s) 818
Bse1I ACTGG 1 cut(s) 385
BseAI TCCGGA 1 cut(s) 920
BseCI ATCGAT 1 cut(s) 471
BseGI GGATG 6 cut(s) 27, 469, 917, 940, 975, 1006
BseLI CCNNNNNNNGG 1 cut(s) 818
BseMII CTCAG 4 cut(s) 552, 761, 769, 1000
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 599, 845
BseXI GCAGC 3 cut(s) 677, 1019, 1036
BseYI CCCAGC 1 cut(s) 979
BshFI GGCC 3 cut(s) 357, 848, 984
BshNI GGYRCC 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 286, 921
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 1 cut(s) 818
BsmAI GTCTC 1 cut(s) 896
BsmFI GGGAC 1 cut(s) 773
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 3 cut(s) 357, 848, 984
Bsp1286I GDGCHC 1 cut(s) 27
Bsp13I TCCGGA 1 cut(s) 920
Bsp143I GATC 5 cut(s) 129, 640, 735, 773, 937
BspACI CCGC 3 cut(s) 306, 525, 953
BspANI GGCC 3 cut(s) 357, 848, 984
BspCNI CTCAG 4 cut(s) 553, 760, 768, 999
BspDI ATCGAT 1 cut(s) 471
BspEI TCCGGA 1 cut(s) 920
BspHI TCATGA 2 cut(s) 244, 738
BspLI GGNNCC 2 cut(s) 290, 775
BspPI GGATC 4 cut(s) 743, 768, 781, 932
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 385
BssMI GATC 5 cut(s) 129, 640, 735, 773, 937
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 5 cut(s) 15, 561, 572, 836, 1050
BstC8I GCNNGC 1 cut(s) 1032
BstDEI CTNAG 4 cut(s) 561, 747, 755, 986
BstF5I GGATG 6 cut(s) 27, 469, 917, 940, 975, 1006
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 5 cut(s) 132, 643, 738, 776, 940
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 5 cut(s) 129, 640, 735, 773, 937
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 784
BstSFI CTRYAG 1 cut(s) 483
BstV1I GCAGC 3 cut(s) 677, 1019, 1036
BstV2I GAAGAC 2 cut(s) 255, 800
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
Bsu15I ATCGAT 1 cut(s) 471
BsuRI GGCC 3 cut(s) 357, 848, 984
BsuTUI ATCGAT 1 cut(s) 471
BtsCI GGATG 6 cut(s) 27, 469, 917, 940, 975, 1006
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 1032
CciI TCATGA 2 cut(s) 244, 738
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 5 cut(s) 313, 355, 846, 880, 982
ClaI ATCGAT 1 cut(s) 471
Csp6I GTAC 1 cut(s) 289
CviAII CATG 6 cut(s) 245, 457, 739, 769, 781, 826
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 4 cut(s) 561, 747, 755, 986
DpnI GATC 5 cut(s) 131, 642, 737, 775, 939
DpnII GATC 5 cut(s) 129, 640, 735, 773, 937
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
Eam1104I CTCTTC 5 cut(s) 15, 561, 572, 836, 1050
EarI CTCTTC 5 cut(s) 15, 561, 572, 836, 1050
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 313, 880
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 347, 1074
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 313, 880
EcoRI GAATTC 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 6 cut(s) 248, 460, 742, 772, 784, 829
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 1 cut(s) 773
FatI CATG 6 cut(s) 244, 456, 738, 768, 780, 825
FbaI TGATCA 1 cut(s) 129
FblI GTMKAC 1 cut(s) 1077
Fnu4HI GCNGC 5 cut(s) 307, 691, 954, 1008, 1050
FokI GGATG 6 cut(s) 14, 476, 904, 947, 982, 1013
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 5 cut(s) 307, 691, 954, 1008, 1050
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 425
GluI GCNGC 5 cut(s) 307, 691, 954, 1008, 1050
GsaI CCCAGC 1 cut(s) 983
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 3 cut(s) 357, 848, 984
HapII CCGG 2 cut(s) 286, 921
HhaI GCGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 248, 460, 742, 772, 784, 829
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 7 cut(s) 45, 65, 607, 680, 822, 924, 960
HpaII CCGG 2 cut(s) 286, 921
HphI GGTGA 5 cut(s) 139, 395, 709, 716, 1025
Hpy166II GTNNAC 2 cut(s) 64, 1078
Hpy188I TCNGA 3 cut(s) 70, 645, 667
Hpy188III TCNNGA 8 cut(s) 133, 245, 430, 739, 812, 901, 913, 921
Hpy8I GTNNAC 2 cut(s) 64, 1078
HpyAV CCTTC 8 cut(s) 118, 290, 322, 343, 490, 530, 646, 736
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 156, 467, 615, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 561, 747, 755, 986
Hsp92II CATG 6 cut(s) 248, 460, 742, 772, 784, 829
HspAI GCGC 1 cut(s) 424
Kpn2I TCCGGA 1 cut(s) 920
KpnI GGTACC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 5 cut(s) 129, 640, 735, 773, 937
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 3 cut(s) 677, 1019, 1036
LweI GCATC 4 cut(s) 90, 454, 1009, 1036
MaeI CTAG 1 cut(s) 786
MaeIII GTNAC 2 cut(s) 337, 697
MalI GATC 5 cut(s) 131, 642, 737, 775, 939
MbiI CCGCTC 1 cut(s) 306
MboI GATC 5 cut(s) 129, 640, 735, 773, 937
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 269, 406, 672
MlyI GAGTC 1 cut(s) 59
MroI TCCGGA 1 cut(s) 920
MseI TTAA 2 cut(s) 51, 974
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 2 cut(s) 286, 921
Mva1269I GAATGC 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 5 cut(s) 129, 640, 735, 773, 937
NlaIII CATG 6 cut(s) 248, 460, 742, 772, 784, 829
NlaIV GGNNCC 2 cut(s) 290, 775
NmuCI GTSAC 1 cut(s) 697
NspI RCATGY 1 cut(s) 784
PagI TCATGA 2 cut(s) 244, 738
PciI ACATGT 1 cut(s) 780
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 6 cut(s) 45, 607, 680, 822, 924, 960
PflMI CCANNNNNTGG 1 cut(s) 818
PkrI GCNGC 5 cut(s) 308, 692, 955, 1009, 1051
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 2 cut(s) 313, 880
PscI ACATGT 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 27
Psp5II RGGWCCY 2 cut(s) 313, 880
PspFI CCCAGC 1 cut(s) 979
PspN4I GGNNCC 2 cut(s) 290, 775
PspPI GGNCC 5 cut(s) 313, 355, 846, 880, 982
PspPPI RGGWCCY 2 cut(s) 313, 880
PsuI RGATCY 1 cut(s) 773
PvuII CAGCTG 1 cut(s) 1010
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 27
SalI GTCGAC 1 cut(s) 1076
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 51, 974
SatI GCNGC 5 cut(s) 307, 691, 954, 1008, 1050
Sau3AI GATC 5 cut(s) 129, 640, 735, 773, 937
Sau96I GGNCC 5 cut(s) 313, 355, 846, 880, 982
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 4 cut(s) 90, 454, 1009, 1036
SfcI CTRYAG 1 cut(s) 483
SinI GGWCC 2 cut(s) 313, 880
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 3 cut(s) 269, 406, 672
SsiI CCGC 3 cut(s) 306, 525, 953
SspMI CTAG 1 cut(s) 786
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 3 cut(s) 471, 900, 1077
TasI AATT 3 cut(s) 269, 406, 672
TauI GCSGC 2 cut(s) 309, 956
TfiI GAWTC 6 cut(s) 45, 607, 680, 822, 924, 960
Tru1I TTAA 2 cut(s) 51, 974
Tru9I TTAA 2 cut(s) 51, 974
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 3 cut(s) 690, 1007, 1049
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 8 cut(s) 23, 233, 261, 362, 445, 459, 570, 755
TspRI CASTG 1 cut(s) 405
Van91I CCANNNNNTGG 1 cut(s) 818
VpaK11BI GGWCC 2 cut(s) 313, 880
XapI RAATTY 1 cut(s) 406
XceI RCATGY 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 1077
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.