Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

14614376 .. 14614690

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGCTCCTACATGTCGAGCAAGAAGACGATGGAGATCAACCTGGATAACGAAATCATGGAGGAGCTGAGGAAGAAGGTGGAGGCTGACAAGAATGACAAGTCTGTGAATGACCTCATGCTGCTGCTGTTCGAGACTGCTCTGCTGACCTCCAGCTTCAGCCTGGATGACCCCAACACTTTCGCAGCGAGAATTCACCGGATGTTGAAATTGGGGCTGAGTATTGAGGAGGAGGAGACCGACGGTGATGATACTGACATGCCTGCTTTGGAGGAGGACGGTGCTGAGGAGAGCAAGATGGAGGAGGTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

4.19

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	1 - 98	1.4e-26	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	42, 162
AluBI	AGCT	3 cut(s)	6, 67, 156
AluI	AGCT	3 cut(s)	6, 67, 156
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	128, 230
ApeKI	GCWGC	3 cut(s)	121, 124, 185
ApoI	RAATTY	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	188, 257
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	2 cut(s)	68, 285
BbvI	GCAGC	3 cut(s)	108, 111, 197
BccI	CCATC	2 cut(s)	25, 292
BciT130I	CCWGG	2 cut(s)	44, 164
BcoDI	GTCTC	2 cut(s)	128, 230
BisI	GCNGC	3 cut(s)	122, 125, 186
BlsI	GCNGC	3 cut(s)	123, 126, 187
Bme1390I	CCNGG	2 cut(s)	44, 164
BmrFI	CCNGG	2 cut(s)	44, 164
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	136
Bpu10I	CCTNAGC	2 cut(s)	68, 285
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	2 cut(s)	44, 164
BseGI	GGATG	2 cut(s)	172, 207
BseJI	GATNNNNATC	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	59, 209, 276
BseRI	GAGGAG	6 cut(s)	77, 242, 245, 248, 287, 302
BseXI	GCAGC	3 cut(s)	108, 111, 197
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	128, 230
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	36
BspCNI	CTCAG	3 cut(s)	60, 210, 277
BspTNI	GGTCTC	1 cut(s)	230
BssMI	GATC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	44, 164
Bst4CI	ACNGT	2 cut(s)	245, 281
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	68, 218, 285
BstF5I	GGATG	2 cut(s)	172, 207
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	128, 230
BstMBI	GATC	1 cut(s)	36
BstNI	CCWGG	2 cut(s)	44, 164
BstNSI	RCATGY	2 cut(s)	16, 262
BstSCI	CCNGG	2 cut(s)	42, 162
BstV1I	GCAGC	3 cut(s)	108, 111, 197
BstV2I	GAAGAC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	172, 207
Cac8I	GCNNGC	1 cut(s)	264
CviAII	CATG	4 cut(s)	13, 58, 118, 259
CviJI	RGCY	6 cut(s)	6, 67, 86, 156, 162, 217
CviKI_1	RGCY	6 cut(s)	6, 67, 86, 156, 162, 217
DdeI	CTNAG	3 cut(s)	68, 218, 285
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	42, 162
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	4 cut(s)	16, 61, 121, 262
FaiI	YATR	4 cut(s)	14, 59, 119, 260
FatI	CATG	4 cut(s)	12, 57, 117, 258
Fnu4HI	GCNGC	3 cut(s)	122, 125, 186
FokI	GGATG	2 cut(s)	179, 214
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	122, 125, 186
GluI	GCNGC	3 cut(s)	122, 125, 186
GsuI	CTGGAG	1 cut(s)	136
HapII	CCGG	1 cut(s)	199
Hin1II	CATG	4 cut(s)	16, 61, 121, 262
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	2 cut(s)	188, 257
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	2 cut(s)	245, 281
HpyF3I	CTNAG	3 cut(s)	68, 218, 285
Hsp92II	CATG	4 cut(s)	16, 61, 121, 262
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	11, 64
LpnPI	CCDG	7 cut(s)	29, 56, 149, 166, 176, 212, 276
Lsp1109I	GCAGC	3 cut(s)	108, 111, 197
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	37, 85
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	192, 209
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	2 cut(s)	44, 164
MvaI	CCWGG	2 cut(s)	44, 164
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	4 cut(s)	16, 61, 121, 262
NspI	RCATGY	2 cut(s)	16, 262
PciI	ACATGT	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	123, 126, 187
PscI	ACATGT	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	42, 162
PspGI	CCWGG	2 cut(s)	42, 162
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	122, 125, 186
Sau3AI	GATC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	44, 164
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	8, 45, 69, 81, 117, 152, 158, 309
Sse9I	AATT	2 cut(s)	192, 209
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	42, 162
TaaI	ACNGT	2 cut(s)	245, 281
TaqI	TCGA	2 cut(s)	17, 132
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	2 cut(s)	192, 209
TseI	GCWGC	3 cut(s)	121, 124, 185
XapI	RAATTY	1 cut(s)	192
XceI	RCATGY	2 cut(s)	16, 262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.