Rh1AG083900

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
14377753 .. 14379175
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG083900.1

Sequence Viewer

Length: 210 bp
ATGCATTTAACCAAAATTAGAGTCAAGAGCCTTAAAGATAATAGCAAGCTTGATGCTCAACCGGAATTTTTCATCAGGCTCGTCCGTGATAAGACCAACAATACCCTCTCCATCATTAATAGCGGTATCGGCAAGACCAAAGCAGATTTGGTGAACTACTTGGGTACAAGGTCGGGGACCAAGGAGTACAGAACCATAAATCAAGCCTAG

Protein Analysis

69

Amino Acids

7.82

Weight (kDa)

10.16

Isoelectric Point (pI)

11.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 2 cut(s) 166, 188
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 1 cut(s) 38
AseI ATTAAT 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 177
BccI CCATC 1 cut(s) 119
BfaI CTAG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 180
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 190
BspACI CCGC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 165, 187
CviJI RGCY 4 cut(s) 30, 49, 79, 206
CviKI_1 RGCY 4 cut(s) 30, 49, 79, 206
CviQI GTAC 2 cut(s) 165, 187
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 180
FaiI YATR 1 cut(s) 197
FaqI GGGAC 1 cut(s) 190
FspBI CTAG 1 cut(s) 208
HapII CCGG 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
LpnPI CCDG 2 cut(s) 61, 75
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 208
MluCI AATT 2 cut(s) 15, 65
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 8, 33, 117
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 6
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 177
RsaI GTAC 2 cut(s) 166, 188
RsaNI GTAC 2 cut(s) 165, 187
SaqAI TTAA 3 cut(s) 8, 33, 117
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 1 cut(s) 30
SetI ASST 2 cut(s) 51, 173
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 1 cut(s) 177
Sse9I AATT 2 cut(s) 15, 65
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 208
StyI CCWWGG 1 cut(s) 180
TasI AATT 2 cut(s) 15, 65
TatI WGTACW 1 cut(s) 186
Tru1I TTAA 3 cut(s) 8, 33, 117
Tru9I TTAA 3 cut(s) 8, 33, 117
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 177
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 208
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.