Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

37933266 .. 37938861

Gene Structure 5596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG201600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGAGGCCTTGCAGTCTGGGGTGTCTGATGTGAGCATGATTGGACAGTTTGGTGTGGGTTTCTATTCCGCTTATCTTGTTGCTGAGAAGGTCATTGTGACCACAAAACACAATGATGATGAACAATACATCTGGGAATCGCAAGCGGGTGGTTCCTTCACTGTCACTAGAGATGTAAACGGAGAGCAGCTAGGCAGGGGAACCAAGATCACTCTCTTCCTCAAGGAGGATCAGTTGGAATATCTAGAGGAGAGGAGGATCAAGGACCTTGTGAAGAAGCACTCTGAATTCATCAGCTATCCCATCTATCTTTGGACGGAAAAGACTACTGAGAAAGAGATTAGTGATGATGAGGAAGATGAGGAAGCCAAGAAGGAAGAGGAAGGACAAGTTGAGGAAGTTAACGAGGACAAGGAGAAAGAATCAAAGAAGAAAAACAAGATCAAGGAGGTTTCCCACGAGTGGGAGCTAATCAACAAGCAGAAACCTATCTGGCTGCGCAAGCCCGAGGAAATTACCAAGGATGAATATGCTGCATTCTACAAGAGCTTGACCAATGACTGGGAGGAACACCTTGCTGTCAAGCATTTCTCTGTTGAAGGACAGCTTGAATTCAAAGCCATTCTCTTTGTCCCAAAGAGAGCTCCGTTCGACCTGTTTGACACCAGGAAAAAGATGAATAACATTAAGCTCTATGTCAGGAGAGTGTTTATTATGGACAACTGTGAAGAGCTCATCCCAGAGTATCTTGGATTTGTTAAGGGTGTCGTGGACTCCGATGACTTGCCACTGAACATCTCTCGTGAGATGCTTCAACAGAACAAGATATTGAAGGTGATTAGGAAGAACCTTGTGAAGAAGTGCATTGAGATGTTCAATGAGATTGCTGAAAACAAAGAGGATTACACCAAGTTTTATGAGGCATTCTCCAAGAACTTGAAGTTGGGTATTCATGAAGACAGCCAGAACAGAGCCAAATTAGCTGACCTTCTCCGGTACCACTCCACCAAGAGTGGTGAGGACCTGACAAGCCTGAAGGACTATGTTACCAGAATGAAGGAGGGCCAAAAGGACATTTACTACATTACTGGTGAGAGCAAGAAGGCAGTGGAGAATTCTCCATTCTTGGAGCGCCTCAAGAAAAAGGGATACGAAGTGCTTTTCATGGTGGACGCGATCGATGAGTATGCTGTAGGTCAGTTGAAGGAGTATGATGGCAAGAAGTTGGTGTCTGCCACAAAGGAAGGATTGAAGCTTGATGATGAAACTGAGGAAGAGAAGCAGAAGAGAGAGGAGAAGAAGAAATCCTTTGAGAATCTTTGCAAGACAATCAAGGACATTTTGGGAGATAGGATTGAGAAGGTAGTAGTATCTGACAGAATTGTGGATTCGCCTTGCTGCTTGGTGACGGGTGAATATGGCTGGACTGCGAATATGGAGAGGATCATGAAGGCTCAGGCTCTCAGGGACAACAGCATGGGATCCTACATGTCTAGCAAGAAGACAATGGAAATCAATCCAGATAATGGAATCATGGAGGAATTGAGGAAGAGGGCCGAAGCAGATAAGAATGACAAGTCTGTCAAGGACCTTGTGCTGCTGCTGTTCGAGACTGCCCTCTTGACTTCCGGATTCAGCTTGGATGATCCCAACACTTTTGCGGCAAGAATCAACAGGATGTTGAAGCTGGGCCTCAGCATTGATGAGGATGAGGCAGCTGGTGAAGATGCAGATATGCCTGCTTTGGAGGACGATGCTGCTGAAGAGAGCAAGATGGAGGAGGTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

596

Amino Acids

68.91

Weight (kDa)

4.98

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	80 - 591	2.9e-242	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1580
Acc16I	TGCGCA	1 cut(s)	500
Acc65I	GGTACC	1 cut(s)	996
AccB1I	GGYRCC	1 cut(s)	996
AccB7I	CCANNNNNTGG	2 cut(s)	561, 1526
AccI	GTMKAC	1 cut(s)	1785
AccII	CGCG	1 cut(s)	1175
AccIII	TCCGGA	1 cut(s)	1628
AciI	CCGC	3 cut(s)	69, 146, 1661
AclWI	GGATC	6 cut(s)	237, 266, 1451, 1476, 1489, 1640
AcsI	RAATTY	3 cut(s)	287, 611, 1114
AcuI	CTGAAG	2 cut(s)	1055, 1782
AfaI	GTAC	1 cut(s)	998
AfiI	CCNNNNNNNGG	5 cut(s)	226, 462, 463, 561, 1526
AflIII	ACRYGT	1 cut(s)	1488
AjnI	CCWGG	1 cut(s)	665
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
Alw21I	GWGCWC	2 cut(s)	646, 735
Alw26I	GTCTC	1 cut(s)	1604
AlwI	GGATC	6 cut(s)	237, 266, 1451, 1476, 1489, 1640
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	1 cut(s)	1628
AoxI	GGCC	4 cut(s)	6, 1063, 1554, 1690
ApeKI	GCWGC	8 cut(s)	187, 496, 533, 1398, 1597, 1600, 1715, 1757
ApoI	RAATTY	3 cut(s)	287, 611, 1114
Asp718I	GGTACC	1 cut(s)	996
AspLEI	GCGC	2 cut(s)	501, 1134
AspS9I	GGNCC	6 cut(s)	265, 1021, 1063, 1554, 1588, 1690
AsuHPI	GGTGA	6 cut(s)	847, 1028, 1103, 1417, 1424, 1733
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	3 cut(s)	265, 1021, 1588
BamHI	GGATCC	1 cut(s)	1481
BanI	GGYRCC	1 cut(s)	996
BanII	GRGCYC	2 cut(s)	646, 735
BauI	CACGAG	2 cut(s)	458, 801
BbsI	GAAGAC	2 cut(s)	963, 1508
Bbv12I	GWGCWC	2 cut(s)	646, 735
BbvCI	CCTCAGC	1 cut(s)	1694
BbvI	GCAGC	8 cut(s)	199, 483, 520, 1385, 1584, 1587, 1727, 1744
BccI	CCATC	3 cut(s)	311, 1208, 1768
BcgI	CGANNNNNNTGC	2 cut(s)	1169, 1203
BciT130I	CCWGG	1 cut(s)	667
BciVI	GTATCC	1 cut(s)	1142
BcoDI	GTCTC	1 cut(s)	1604
BfaI	CTAG	4 cut(s)	168, 191, 245, 1494
BfmI	CTRYAG	1 cut(s)	1191
BfoI	RGCGCY	1 cut(s)	1135
BfuI	GTATCC	1 cut(s)	1142
BisI	GCNGC	9 cut(s)	188, 497, 534, 1399, 1598, 1601, 1662, 1716, 1758
BlsI	GCNGC	9 cut(s)	189, 498, 535, 1400, 1599, 1602, 1663, 1717, 1759
Bme1390I	CCNGG	1 cut(s)	667
Bme18I	GGWCC	3 cut(s)	265, 1021, 1588
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	6 cut(s)	265, 1021, 1063, 1554, 1588, 1690
BmiI	GGNNCC	4 cut(s)	154, 202, 998, 1483
BmrFI	CCNGG	1 cut(s)	667
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	3 cut(s)	798, 1717, 1744
BmuI	ACTGGG	1 cut(s)	571
BpiI	GAAGAC	2 cut(s)	963, 1508
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
Bpu10I	CCTNAGC	2 cut(s)	1455, 1694
BpuEI	CTTGAG	2 cut(s)	206, 1121
Bsa29I	ATCGAT	1 cut(s)	1179
BsaJI	CCNNGG	2 cut(s)	507, 519
BsaWI	WCCGGW	2 cut(s)	993, 1628
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	5 cut(s)	226, 462, 463, 561, 1526
Bse1I	ACTGG	2 cut(s)	566, 1093
BseAI	TCCGGA	1 cut(s)	1628
BseBI	CCWGG	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	1179
BseDI	CCNNGG	2 cut(s)	507, 519
BseGI	GGATG	5 cut(s)	529, 735, 1648, 1683, 1714
BseLI	CCNNNNNNNGG	5 cut(s)	226, 462, 463, 561, 1526
BseMII	CTCAG	6 cut(s)	75, 321, 1260, 1469, 1477, 1708
BseNI	ACTGG	2 cut(s)	566, 1093
BseRI	GAGGAG	3 cut(s)	263, 268, 1307
BseXI	GCAGC	8 cut(s)	199, 483, 520, 1385, 1584, 1587, 1727, 1744
BseYI	CCCAGC	1 cut(s)	1687
Bsh1236I	CGCG	1 cut(s)	1175
Bsh1285I	CGRYCG	1 cut(s)	1179
BshFI	GGCC	4 cut(s)	8, 1065, 1556, 1692
BshNI	GGYRCC	1 cut(s)	996
BshVI	ATCGAT	1 cut(s)	1179
BsiEI	CGRYCG	1 cut(s)	1179
BsiHKAI	GWGCWC	2 cut(s)	646, 735
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	2 cut(s)	994, 1629
BslFI	GGGAC	2 cut(s)	617, 1481
BslI	CCNNNNNNNGG	5 cut(s)	226, 462, 463, 561, 1526
BsmAI	GTCTC	1 cut(s)	1604
BsmFI	GGGAC	2 cut(s)	617, 1481
BsmI	GAATGC	2 cut(s)	536, 923
BsnI	GGCC	4 cut(s)	8, 1065, 1556, 1692
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	2 cut(s)	646, 735
Bsp13I	TCCGGA	1 cut(s)	1628
Bsp143I	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
BspACI	CCGC	3 cut(s)	69, 146, 1661
BspANI	GGCC	4 cut(s)	8, 1065, 1556, 1692
BspCNI	CTCAG	6 cut(s)	76, 322, 1261, 1468, 1476, 1707
BspDI	ATCGAT	1 cut(s)	1179
BspEI	TCCGGA	1 cut(s)	1628
BspFNI	CGCG	1 cut(s)	1175
BspHI	TCATGA	2 cut(s)	952, 1446
BspLI	GGNNCC	4 cut(s)	154, 202, 998, 1483
BspPI	GGATC	6 cut(s)	237, 266, 1451, 1476, 1489, 1640
BspQI	GCTCTTC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	996
BsrI	ACTGG	2 cut(s)	566, 1093
BssECI	CCNNGG	2 cut(s)	507, 519
BssMI	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
BssSI	CACGAG	2 cut(s)	458, 801
BssT1I	CCWWGG	1 cut(s)	519
Bst2BI	CACGAG	2 cut(s)	458, 801
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	48, 163, 725
Bst6I	CTCTTC	7 cut(s)	221, 372, 723, 1269, 1280, 1544, 1758
BstC8I	GCNNGC	3 cut(s)	144, 503, 1740
BstDEI	CTNAG	6 cut(s)	84, 330, 1269, 1455, 1463, 1694
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	5 cut(s)	529, 735, 1648, 1683, 1714
BstFNI	CGCG	1 cut(s)	1175
BstH2I	RGCGCY	1 cut(s)	1135
BstHHI	GCGC	2 cut(s)	501, 1134
BstKTI	GATC	8 cut(s)	210, 232, 261, 444, 1179, 1446, 1484, 1648
BstMAI	GTCTC	1 cut(s)	1604
BstMBI	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
BstMCI	CGRYCG	1 cut(s)	1179
BstMWI	GCNNNNNNNGC	2 cut(s)	502, 980
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	1492
BstSCI	CCNGG	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	1191
BstUI	CGCG	1 cut(s)	1175
BstV1I	GCAGC	8 cut(s)	199, 483, 520, 1385, 1584, 1587, 1727, 1744
BstV2I	GAAGAC	2 cut(s)	963, 1508
BstX2I	RGATCY	1 cut(s)	1481
BstYI	RGATCY	1 cut(s)	1481
Bsu15I	ATCGAT	1 cut(s)	1179
BsuI	GTATCC	1 cut(s)	1142
BsuRI	GGCC	4 cut(s)	8, 1065, 1556, 1692
BsuTUI	ATCGAT	1 cut(s)	1179
BtsCI	GGATG	5 cut(s)	529, 735, 1648, 1683, 1714
BtsI	GCAGTG	1 cut(s)	1113
BtsIMutI	CAGTG	3 cut(s)	159, 788, 1113
Cac8I	GCNNGC	3 cut(s)	144, 503, 1740
CciI	TCATGA	2 cut(s)	952, 1446
CfoI	GCGC	2 cut(s)	501, 1134
Cfr13I	GGNCC	6 cut(s)	265, 1021, 1063, 1554, 1588, 1690
ClaI	ATCGAT	1 cut(s)	1179
CseI	GACGC	1 cut(s)	1181
Csp6I	GTAC	1 cut(s)	997
CviAII	CATG	7 cut(s)	37, 953, 1165, 1447, 1477, 1489, 1534
CviQI	GTAC	1 cut(s)	997
DdeI	CTNAG	6 cut(s)	84, 330, 1269, 1455, 1463, 1694
DpnI	GATC	8 cut(s)	209, 231, 260, 443, 1178, 1445, 1483, 1647
DpnII	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
DrdI	GACNNNNNNGTC	1 cut(s)	1580
DseDI	GACNNNNNNGTC	1 cut(s)	1580
Eam1104I	CTCTTC	7 cut(s)	221, 372, 723, 1269, 1280, 1544, 1758
EarI	CTCTTC	7 cut(s)	221, 372, 723, 1269, 1280, 1544, 1758
Ecl136II	GAGCTC	2 cut(s)	644, 733
Eco130I	CCWWGG	1 cut(s)	519
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	646, 735
Eco47I	GGWCC	3 cut(s)	265, 1021, 1588
Eco53kI	GAGCTC	2 cut(s)	644, 733
Eco57I	CTGAAG	2 cut(s)	1055, 1782
Eco88I	CYCGRG	1 cut(s)	506
EcoICRI	GAGCTC	2 cut(s)	644, 733
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoO109I	RGGNCCY	3 cut(s)	265, 1021, 1588
EcoRI	GAATTC	3 cut(s)	287, 611, 1114
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	2 cut(s)	646, 735
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	7 cut(s)	40, 956, 1168, 1450, 1480, 1492, 1537
FalI	AAGNNNNNCTT	4 cut(s)	591, 623, 1292, 1324
FaqI	GGGAC	2 cut(s)	617, 1481
FatI	CATG	7 cut(s)	36, 952, 1164, 1446, 1476, 1488, 1533
FauI	CCCGC	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	1785
Fnu4HI	GCNGC	9 cut(s)	188, 497, 534, 1399, 1598, 1601, 1662, 1716, 1758
FokI	GGATG	5 cut(s)	536, 722, 1655, 1690, 1721
FriOI	GRGCYC	2 cut(s)	646, 735
Fsp4HI	GCNGC	9 cut(s)	188, 497, 534, 1399, 1598, 1601, 1662, 1716, 1758
FspBI	CTAG	4 cut(s)	168, 191, 245, 1494
FspI	TGCGCA	1 cut(s)	500
GlaI	GCGC	2 cut(s)	500, 1133
GluI	GCNGC	9 cut(s)	188, 497, 534, 1399, 1598, 1601, 1662, 1716, 1758
GsaI	CCCAGC	1 cut(s)	1691
HaeII	RGCGCY	1 cut(s)	1135
HaeIII	GGCC	4 cut(s)	8, 1065, 1556, 1692
HapII	CCGG	2 cut(s)	994, 1629
HgaI	GACGC	1 cut(s)	1181
HhaI	GCGC	2 cut(s)	501, 1134
Hin1II	CATG	7 cut(s)	40, 956, 1168, 1450, 1480, 1492, 1537
Hin6I	GCGC	2 cut(s)	499, 1132
HinP1I	GCGC	2 cut(s)	499, 1132
HincII	GTYRAC	2 cut(s)	403, 1786
HindII	GTYRAC	2 cut(s)	403, 1786
HindIII	AAGCTT	1 cut(s)	1253
HinfI	GANTC	8 cut(s)	137, 422, 773, 1315, 1388, 1530, 1632, 1668
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	994, 1629
HphI	GGTGA	6 cut(s)	847, 1028, 1103, 1417, 1424, 1733
Hpy166II	GTNNAC	5 cut(s)	178, 403, 772, 1171, 1786
Hpy188I	TCNGA	4 cut(s)	28, 286, 778, 1375
Hpy8I	GTNNAC	5 cut(s)	178, 403, 772, 1171, 1786
HpyCH4III	ACNGT	3 cut(s)	48, 163, 725
HpyCH4V	TGCA	5 cut(s)	13, 536, 864, 1323, 1730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	502, 980
HpyF3I	CTNAG	6 cut(s)	84, 330, 1269, 1455, 1463, 1694
Hsp92II	CATG	7 cut(s)	40, 956, 1168, 1450, 1480, 1492, 1537
HspAI	GCGC	2 cut(s)	499, 1132
Kpn2I	TCCGGA	1 cut(s)	1628
KpnI	GGTACC	1 cut(s)	1000
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
LguI	GCTCTTC	1 cut(s)	723
LmnI	GCTCC	3 cut(s)	466, 649, 1129
Lsp1109I	GCAGC	8 cut(s)	199, 483, 520, 1385, 1584, 1587, 1727, 1744
LweI	GCATC	3 cut(s)	798, 1717, 1744
MaeI	CTAG	4 cut(s)	168, 191, 245, 1494
MaeIII	GTNAC	4 cut(s)	97, 163, 1045, 1405
MalI	GATC	8 cut(s)	209, 231, 260, 443, 1178, 1445, 1483, 1647
MboI	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
MflI	RGATCY	1 cut(s)	1481
MhlI	GDGCHC	2 cut(s)	646, 735
MluCI	AATT	7 cut(s)	287, 513, 611, 977, 1114, 1380, 1541
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	1628
MseI	TTAA	3 cut(s)	402, 687, 759
MslI	CAYNNNNRTG	2 cut(s)	114, 869
MspA1I	CMGCKG	1 cut(s)	1718
MspI	CCGG	2 cut(s)	994, 1629
MspR9I	CCNGG	1 cut(s)	667
Mva1269I	GAATGC	2 cut(s)	536, 923
MvaI	CCWGG	1 cut(s)	667
MvnI	CGCG	1 cut(s)	1175
MwoI	GCNNNNNNNGC	2 cut(s)	502, 980
NdeII	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
NlaIII	CATG	7 cut(s)	40, 956, 1168, 1450, 1480, 1492, 1537
NlaIV	GGNNCC	4 cut(s)	154, 202, 998, 1483
NmuCI	GTSAC	3 cut(s)	97, 163, 1405
NsbI	TGCGCA	1 cut(s)	500
NspI	RCATGY	1 cut(s)	1492
PagI	TCATGA	2 cut(s)	952, 1446
PceI	AGGCCT	1 cut(s)	8
PciI	ACATGT	1 cut(s)	1488
PciSI	GCTCTTC	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	1 cut(s)	774
PctI	GAATGC	2 cut(s)	536, 923
PfeI	GAWTC	7 cut(s)	137, 422, 1315, 1388, 1530, 1632, 1668
PflMI	CCANNNNNTGG	2 cut(s)	561, 1526
PkrI	GCNGC	9 cut(s)	189, 498, 535, 1400, 1599, 1602, 1663, 1717, 1759
Ple19I	CGATCG	1 cut(s)	1179
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
PpuMI	RGGWCCY	3 cut(s)	265, 1021, 1588
PscI	ACATGT	1 cut(s)	1488
Psp124BI	GAGCTC	2 cut(s)	646, 735
Psp5II	RGGWCCY	3 cut(s)	265, 1021, 1588
Psp6I	CCWGG	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	1687
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	4 cut(s)	154, 202, 998, 1483
PspPI	GGNCC	6 cut(s)	265, 1021, 1063, 1554, 1588, 1690
PspPPI	RGGWCCY	3 cut(s)	265, 1021, 1588
PsuI	RGATCY	1 cut(s)	1481
PvuI	CGATCG	1 cut(s)	1179
PvuII	CAGCTG	1 cut(s)	1718
RsaI	GTAC	1 cut(s)	998
RsaNI	GTAC	1 cut(s)	997
RseI	CAYNNNNRTG	2 cut(s)	114, 869
SacI	GAGCTC	2 cut(s)	646, 735
SalI	GTCGAC	1 cut(s)	1784
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	402, 687, 759
SatI	GCNGC	9 cut(s)	188, 497, 534, 1399, 1598, 1601, 1662, 1716, 1758
Sau3AI	GATC	8 cut(s)	207, 229, 258, 441, 1176, 1443, 1481, 1645
Sau96I	GGNCC	6 cut(s)	265, 1021, 1063, 1554, 1588, 1690
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	2 cut(s)	646, 735
SfaNI	GCATC	3 cut(s)	798, 1717, 1744
SfcI	CTRYAG	1 cut(s)	1191
SinI	GGWCC	3 cut(s)	265, 1021, 1588
SmiMI	CAYNNNNRTG	2 cut(s)	114, 869
SmlI	CTYRAG	2 cut(s)	221, 1136
SmoI	CTYRAG	2 cut(s)	221, 1136
Sse9I	AATT	7 cut(s)	287, 513, 611, 977, 1114, 1380, 1541
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	69, 146, 1661
SspMI	CTAG	4 cut(s)	168, 191, 245, 1494
SstI	GAGCTC	2 cut(s)	646, 735
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	665
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	48, 163, 725
TaqI	TCGA	4 cut(s)	651, 1179, 1608, 1785
TasI	AATT	7 cut(s)	287, 513, 611, 977, 1114, 1380, 1541
TauI	GCSGC	1 cut(s)	1664
TfiI	GAWTC	7 cut(s)	137, 422, 1315, 1388, 1530, 1632, 1668
Tru1I	TTAA	3 cut(s)	402, 687, 759
Tru9I	TTAA	3 cut(s)	402, 687, 759
TscAI	CASTG	3 cut(s)	166, 795, 1113
TseFI	GTSAC	3 cut(s)	97, 163, 1405
TseI	GCWGC	8 cut(s)	187, 496, 533, 1398, 1597, 1600, 1715, 1757
Tsp45I	GTSAC	3 cut(s)	97, 163, 1405
TspGWI	ACGGA	3 cut(s)	195, 332, 636
TspRI	CASTG	3 cut(s)	166, 795, 1113
Van91I	CCANNNNNTGG	2 cut(s)	561, 1526
VpaK11BI	GGWCC	3 cut(s)	265, 1021, 1588
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	3 cut(s)	287, 611, 1114
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	1492
XmiI	GTMKAC	1 cut(s)	1785
XspI	CTAG	4 cut(s)	168, 191, 245, 1494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.