Rmu_co8423093.1_g000001

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8423093.1
Physical Location & Seq
Forward (+)
3 .. 986
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8423093.1_g000001.1.cds

Sequence Viewer

Length: 984 bp
atgcttcaacagaacaagatattgaaggtgatcaggaagaaccttgtgaagaagtgcattgagatgttcaatgagattgctgaaaacaaagaggattacactaagttttatgaggcattctccaagaacttgaagttgggtattcatgaagacagccagaacagagccaaattggctgaccttctccggtaccactccaccaagagtggtgaggacctgacaagcctgaaggactatgttaccagaatgaaggagggccaaaaggacatttactacattactggtgagagcaagaaggcagtggagaattctccattcttggagcgcctcaagaaaaagggatatgaagtgcttttcatggtggatgcaatcgatgagtatgctgtaggtcagttgaaggagtatgatggcaagaagttggtgtctgccacaaaggaaggattgaagcttgatgatgaaactgaggaagagaagcagaagagagaggagaagaagaaatcctttgagaatctttgcaagacaatcaaggacattttgggagataggattgagaaggtagtagtatctgacagaattgtggattcgccttgctgcttggtgacgggtgaatatggctggactgcgaatatggagaggatcatgaaggctcaggctctcagggacaacagcatgggatcctacatgtctagcaagaagacaatggaaatcaatccagataatggaatcatggaggagttgaggaagagggccgaagctgataagaatgacaagtctgtcaaggaccttgtgctgctgctgttcgagacttccctcttgacttccggattcagcttggatgatcccaacacttttgcagcaagaatcaacaggatgttgaagctgggcctcagcattgatgaggatgaggcagctggtgaagatgcagatatgcctgctttggaggacgatgctgctgaagagagcaagatggaggaggtcgactaa

Protein Analysis

327

Amino Acids

37.39

Weight (kDa)

5.06

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 773
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 719
AccI GTMKAC 1 cut(s) 978
AccIII TCCGGA 1 cut(s) 821
AclWI GGATC 4 cut(s) 644, 669, 682, 833
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 248, 975
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 7 cut(s) 8, 25, 70, 133, 397, 445, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 5 cut(s) 448, 755, 831, 880, 911
AluI AGCT 5 cut(s) 448, 755, 831, 880, 911
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 4 cut(s) 644, 669, 682, 833
Aor13HI TCCGGA 1 cut(s) 821
AoxI GGCC 3 cut(s) 256, 747, 883
ApeKI GCWGC 6 cut(s) 591, 790, 793, 854, 908, 950
ApoI RAATTY 1 cut(s) 307
Asp718I GGTACC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 5 cut(s) 214, 256, 747, 781, 883
AsuHPI GGTGA 6 cut(s) 40, 221, 296, 610, 617, 926
AvaII GGWCC 2 cut(s) 214, 781
BamHI GGATCC 1 cut(s) 674
BanI GGYRCC 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 156, 701
BbvCI CCTCAGC 1 cut(s) 887
BbvI GCAGC 6 cut(s) 578, 777, 780, 866, 920, 937
BccI CCATC 2 cut(s) 401, 961
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BclI TGATCA 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 328
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 6 cut(s) 592, 791, 794, 855, 909, 951
BlsI GCNGC 6 cut(s) 593, 792, 795, 856, 910, 952
Bme18I GGWCC 2 cut(s) 214, 781
BmgT120I GGNCC 5 cut(s) 214, 256, 747, 781, 883
BmiI GGNNCC 2 cut(s) 191, 676
BmsI GCATC 3 cut(s) 355, 910, 937
BpiI GAAGAC 2 cut(s) 156, 701
BplI GAGNNNNNCTC 2 cut(s) 104, 136
Bpu10I CCTNAGC 2 cut(s) 648, 887
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 372
BsaWI WCCGGW 2 cut(s) 186, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 286
BseAI TCCGGA 1 cut(s) 821
BseCI ATCGAT 1 cut(s) 372
BseGI GGATG 4 cut(s) 370, 841, 876, 907
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMII CTCAG 4 cut(s) 453, 662, 670, 901
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 500, 746
BseXI GCAGC 6 cut(s) 578, 777, 780, 866, 920, 937
BseYI CCCAGC 1 cut(s) 880
BshFI GGCC 3 cut(s) 258, 749, 885
BshNI GGYRCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 372
BsiSI CCGG 2 cut(s) 187, 822
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 3 cut(s) 258, 749, 885
Bsp13I TCCGGA 1 cut(s) 821
Bsp143I GATC 4 cut(s) 30, 636, 674, 838
BspANI GGCC 3 cut(s) 258, 749, 885
BspCNI CTCAG 4 cut(s) 454, 661, 669, 900
BspDI ATCGAT 1 cut(s) 372
BspEI TCCGGA 1 cut(s) 821
BspHI TCATGA 2 cut(s) 145, 639
BspLI GGNNCC 2 cut(s) 191, 676
BspPI GGATC 4 cut(s) 644, 669, 682, 833
BspT107I GGYRCC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 286
BssMI GATC 4 cut(s) 30, 636, 674, 838
Bst6I CTCTTC 4 cut(s) 462, 473, 737, 951
BstC8I GCNNGC 1 cut(s) 933
BstDEI CTNAG 5 cut(s) 102, 462, 648, 656, 887
BstF5I GGATG 4 cut(s) 370, 841, 876, 907
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 4 cut(s) 33, 639, 677, 841
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 4 cut(s) 30, 636, 674, 838
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 685
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 6 cut(s) 578, 777, 780, 866, 920, 937
BstV2I GAAGAC 2 cut(s) 156, 701
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
Bsu15I ATCGAT 1 cut(s) 372
BsuRI GGCC 3 cut(s) 258, 749, 885
BsuTUI ATCGAT 1 cut(s) 372
BtsCI GGATG 4 cut(s) 370, 841, 876, 907
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 933
CciI TCATGA 2 cut(s) 145, 639
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 5 cut(s) 214, 256, 747, 781, 883
ClaI ATCGAT 1 cut(s) 372
Csp6I GTAC 1 cut(s) 190
CviAII CATG 6 cut(s) 146, 358, 640, 670, 682, 727
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 5 cut(s) 102, 462, 648, 656, 887
DpnI GATC 4 cut(s) 32, 638, 676, 840
DpnII GATC 4 cut(s) 30, 636, 674, 838
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
Eam1104I CTCTTC 4 cut(s) 462, 473, 737, 951
EarI CTCTTC 4 cut(s) 462, 473, 737, 951
Eco47I GGWCC 2 cut(s) 214, 781
Eco57I CTGAAG 2 cut(s) 248, 975
EcoO109I RGGNCCY 2 cut(s) 214, 781
EcoRI GAATTC 1 cut(s) 307
FaeI CATG 6 cut(s) 149, 361, 643, 673, 685, 730
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 674
FatI CATG 6 cut(s) 145, 357, 639, 669, 681, 726
FbaI TGATCA 1 cut(s) 30
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 6 cut(s) 592, 791, 794, 855, 909, 951
FokI GGATG 4 cut(s) 377, 848, 883, 914
Fsp4HI GCNGC 6 cut(s) 592, 791, 794, 855, 909, 951
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 326
GluI GCNGC 6 cut(s) 592, 791, 794, 855, 909, 951
GsaI CCCAGC 1 cut(s) 884
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 258, 749, 885
HapII CCGG 2 cut(s) 187, 822
HhaI GCGC 1 cut(s) 327
Hin1II CATG 6 cut(s) 149, 361, 643, 673, 685, 730
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 5 cut(s) 508, 581, 723, 825, 861
HpaII CCGG 2 cut(s) 187, 822
HphI GGTGA 6 cut(s) 40, 221, 296, 610, 617, 926
Hpy166II GTNNAC 1 cut(s) 979
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 8 cut(s) 34, 146, 331, 640, 713, 802, 814, 822
Hpy8I GTNNAC 1 cut(s) 979
HpyAV CCTTC 9 cut(s) 19, 191, 223, 244, 289, 391, 431, 547, 637
HpyCH4V TGCA 5 cut(s) 57, 368, 516, 854, 923
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 5 cut(s) 102, 462, 648, 656, 887
Hsp92II CATG 6 cut(s) 149, 361, 643, 673, 685, 730
HspAI GCGC 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 821
KpnI GGTACC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 4 cut(s) 30, 636, 674, 838
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 6 cut(s) 578, 777, 780, 866, 920, 937
LweI GCATC 3 cut(s) 355, 910, 937
MaeI CTAG 1 cut(s) 687
MaeIII GTNAC 2 cut(s) 238, 598
MalI GATC 4 cut(s) 32, 638, 676, 840
MboI GATC 4 cut(s) 30, 636, 674, 838
MflI RGATCY 1 cut(s) 674
MluCI AATT 3 cut(s) 170, 307, 573
MroI TCCGGA 1 cut(s) 821
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 2 cut(s) 187, 822
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 4 cut(s) 30, 636, 674, 838
NlaIII CATG 6 cut(s) 149, 361, 643, 673, 685, 730
NlaIV GGNNCC 2 cut(s) 191, 676
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 685
PagI TCATGA 2 cut(s) 145, 639
PciI ACATGT 1 cut(s) 681
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 5 cut(s) 508, 581, 723, 825, 861
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 6 cut(s) 593, 792, 795, 856, 910, 952
PpuMI RGGWCCY 2 cut(s) 214, 781
PscI ACATGT 1 cut(s) 681
Psp5II RGGWCCY 2 cut(s) 214, 781
PspFI CCCAGC 1 cut(s) 880
PspN4I GGNNCC 2 cut(s) 191, 676
PspPI GGNCC 5 cut(s) 214, 256, 747, 781, 883
PspPPI RGGWCCY 2 cut(s) 214, 781
PsuI RGATCY 1 cut(s) 674
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 62
SalI GTCGAC 1 cut(s) 977
SatI GCNGC 6 cut(s) 592, 791, 794, 855, 909, 951
Sau3AI GATC 4 cut(s) 30, 636, 674, 838
Sau96I GGNCC 5 cut(s) 214, 256, 747, 781, 883
SfaNI GCATC 3 cut(s) 355, 910, 937
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 2 cut(s) 214, 781
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 3 cut(s) 170, 307, 573
SspMI CTAG 1 cut(s) 687
TaqI TCGA 3 cut(s) 372, 801, 978
TasI AATT 3 cut(s) 170, 307, 573
TfiI GAWTC 5 cut(s) 508, 581, 723, 825, 861
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 6 cut(s) 591, 790, 793, 854, 908, 950
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 7 cut(s) 134, 162, 263, 346, 360, 471, 656
TspRI CASTG 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 214, 781
XapI RAATTY 1 cut(s) 307
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.