Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

16480831 .. 16481169

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATTGGTTTCTCCCTCAAAGGTCAAACCATTGATGTCGGAGTTGCTGACAAGCCTCCACAGTCTGTTATGTCTCCTGGACCACCAGCTTCGGCAATGTCACCACACCAGCCTATTGGCATGTATCCATTGAACCTCTTTGACAATAAGAAGAGGATGAATAATATCAATTATGTCAGGAGGGTGTTTATCATGGACAACTATGAGGAGCTCACTCTAGAGTACCTTGGATTCGTAAAGGGTGTTGTGGACTTTGATGACTTGCCGCTCAACATCTCTTGTGAGATGCTTCCACAAAACACGATTTTCAAGGTGATCAGGAAGAACATTGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

112

Amino Acids

12.66

Weight (kDa)

7.83

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	42 - 112	5.7e-25	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	268
AciI	CCGC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	133, 310
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	2 cut(s)	89, 211
AluI	AGCT	2 cut(s)	89, 211
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	93, 325
AvaII	GGWCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	121, 193
CviJI	RGCY	4 cut(s)	55, 89, 112, 211
CviKI_1	RGCY	4 cut(s)	55, 89, 112, 211
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	124, 196
FaiI	YATR	5 cut(s)	71, 122, 174, 194, 204
FatI	CATG	2 cut(s)	120, 192
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	124, 196
HinfI	GANTC	1 cut(s)	231
HphI	GGTGA	2 cut(s)	93, 325
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	178, 218, 319
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	124, 196
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	63, 90, 99, 122, 163, 304
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	317
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	1 cut(s)	315
MboII	GAAGA	2 cut(s)	163, 334
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	6 cut(s)	26, 66, 146, 147, 174, 199
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	2 cut(s)	124, 196
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SacI	GAGCTC	1 cut(s)	213
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	25, 91, 138, 213, 228, 315
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	63
TasI	AATT	1 cut(s)	169
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	80
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.