Rh2AG541400

Splicing factor 1 helix-hairpin domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
76881581 .. 76896474
14894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG541400.1

Sequence Viewer

Length: 2751 bp
ATGCATTTCTTAAACTGTAAAGAGCCAGATAAGCAGTGTTTCAGAGATACAATTTTCAGTCCTCAATTTTCAATGTGGTCGGTGACTTCAAAATTGTTGACGTTTGAATCGGGTACGAATGGGAAGCAAATGGATGATGAGTACCAGAATTTTTTGGCCGAGTCTGGTGGGACAATGTCTGAATCAGCAACCAAGCAGACTGCTACTTTGGCTCTTGGCACATGCAATTCAGTAAGCAATCTTCCTTGGGTTAACAATGCTGGGAATGCTATTAGTACAGCAAATCCAGGATTGGGCTCAACTGGATTGAAGCCTCCCAAGGAATATGATGACACAAATTTGTACATCGAGTACTTGCCACCTACTCTTGATGATGTTGGTTTGATTGGGTTGTTTTCATGTGTAGGCAATATTGTGATGTGCAAAGTTATGAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTATGCAGCTGTTCAACTGGGTAATAGTGCTATTGCAAGCATGATTGGTTTCTCCCTCGAAGGTCGAACCATTGCTGACAAGCCTCCACAGCCTGTTATGTCTCCTGGACCACCAGCTTCGGCAATGTCACCACACCAGCCTATTGGCGTGTATCCACTGGACCTCTTTGACAACAAGAAGAAGATGAATAATATCAATTATGTCAGGAGGGTGTTTATCATGAACAACTGTGAGGAGCTCATTCTAGAGTGCCTTGGATTCGTGAAGGATGTTGTGGACTCTGATGACTTGCCGCTCAACATCTCTTGTGAGATGCTTCCACAAAACAAGATTTTGAAGGTGATCAGGAAGAACATTGTGAAAGAGGGCATTGAGATGTTCAATGAGATTGATAAGAAGAAAGAAGATTACACCATGTTTTATGAATTATTCTCCAAAAATTTGAAATTGGGTATCTACGAAGATGGTCAGAACAGAACTCAATTGGCTGACCTTCGCTACTACTCCACAAAGAGCAGTGAGGAATTTACAAGCTTGAAGGACTATGTTACCAAAATGAAGGAGGGTCAGAAAGACATTTTCTACATCACTTATGAGAGCACTAGCAGAGATGCCAAGATTCTATTTGTTCATATGCAGGACAGGCCAATTGAAACTACGTCTTCAATCCTGCACTACTTGGTCCAATCTTCTTTGGGTGAGAGTGAAACTCGTCCTATTTGTCACCCAAGGAGCTTTATTGTTGATGAATATTTTGACTGTCTGAAAAGCAATTTAAAATTATCTTTTGTGAGGTACCCTTCTGATGCACTTCTTTCAAGTGATAATTGTGTAGGCTTTTTGACTAATATGCACAAGTTTTTTCAACACATGGTGGGACATGTTCATGAAGATGAGCTTTTCATGGCAACGTGCTCTTCCACTTCTTGTCCGCCATTCCATGCACTTTTGAAGAAATTGTTTCTTTTATCACCTGTGGTTGCTATCCATTCATTACGACCACTTTTGGCTGACATATTGAGAGCTGATGCACAGTTTATCTTTGGAATTATGATGGTTTTCTCTATGAATGAGCTGATGTCTTTGAGGTCTAAGAAACAGGGCCTTGAAATTGGGTATAGTGATATTGATAATGGAAATTATTGTTCTTCTATGAGCTGTTCTCTTCACTTACCTCATTTCATGATTACATGGTTTTTTGACTTCACTTCTGTGGCAACTGACTTTGGAGATCTTGCATTAATTCCCCCACAATACTTTTCAGTACCTATGTGGTCAAATGAGGCTCCCTCGCTTATATTGTTGTTTAGAGTTGTACACTCTCAGGCAATTGAATTTGTGAATTCAAGCCATATACTGCAGGGTCCCAATAGAGAAGCCTTCAGAACCTCTGCTACTTCTCATGTTGGTGTTCATTTATGTCCACTAATGCATAATAGTGTCTTCAAATATTATATATGTCTCTTGAAGCAAAGAATGGAGTTTCCCTGGAATTACATGCCATATAATAAGCTGGCTATCTTTCTTAGTTGGACCATTAAGACGCGGTCATGTTTCAAAGAAGTGGCAAATATTGATACAACACTGCACCCTACTGTGGGAGTTTTTTATGCTGCTAATAATTCTAGCACTGGAACAGACTCAGAAAAGATGTCAGAAAGGGACTTGCTTGGTGACATAATTAAGACACTATTATATGTGATAAGTGAGATCATTCATGTGGCTCCTGATAATTTGGATAGTTTCTCTGCTTATTTGCAACCTAGCCGATATGATAGAGATACAAGTATAACTGCGGAGTTGTCAAATGGAAACTGCAGTGATTCTCAATATATTTGTGGTATTGCTAGACTTGTTCTTGGTTTGGCAAGTTCTGTTGGTGCAATGTACAGAGCTGGGGTGGATGATGCTATTTTCAATATAAACAAGGTTATGGTATCATGGGTTCCGCATATGAATAGACTGGTTCAAGGCTCCTTTCATCATCTTATCCAATGGGGTATCACCCTTGAGTTTGTCTCTACTATCTCCATTTATGGTTGCTTCTTTTATAACAATTTGGGGGCTGCTTTTGACAATATAATGGCTCTCCAACTGGTTAACATAGTTGATTGTGCTCTTGGAACTTCACTCAATGCTTTTGACAGGTATTGGGATAAAATGTTCTTGCTGTTGGCAGTATCTGCAGTTCTGGAGCCTCAGAAGCCAAAGATGACTTTTGGTAACTTGGATAATGAAGCAGGGACAAAATTTTGGAAGACATTTCAGGCTTGA

Protein Analysis

916

Amino Acids

103.06

Weight (kDa)

5.88

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 114 - 183 4.8e-10 RNA recognition motif
HSP90 PF00183 211 - 366 2.4e-59 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2529
Acc65I GGTACC 1 cut(s) 1272
AccB1I GGYRCC 1 cut(s) 1272
AccBSI CCGCTC 1 cut(s) 772
AccII CGCG 1 cut(s) 2023
AciI CCGC 5 cut(s) 770, 1409, 2023, 2273, 2426
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 7 cut(s) 148, 337, 916, 1001, 1811, 1819, 2726
AcuI CTGAAG 1 cut(s) 1843
AdeI CACNNNGTG 1 cut(s) 1351
AfaI GTAC 9 cut(s) 115, 143, 277, 344, 353, 1274, 1743, 1794, 2366
AfiI CCNNNNNNNGG 3 cut(s) 293, 2074, 2075
AflIII ACRYGT 1 cut(s) 1357
AjnI CCWGG 3 cut(s) 286, 580, 1964
AleI CACNNNNGTG 1 cut(s) 1688
AloI GAACNNNNNNTCC 2 cut(s) 2624, 2656
Alw21I GWGCWC 4 cut(s) 717, 1079, 1394, 2596
Alw26I GTCTC 3 cut(s) 582, 1943, 2500
AlwNI CAGNNNCTG 1 cut(s) 2660
AoxI GGCC 3 cut(s) 156, 1121, 1579
ApeKI GCWGC 3 cut(s) 482, 2090, 2543
ApoI RAATTY 7 cut(s) 148, 337, 916, 1001, 1811, 1819, 2726
ArsI GACNNNNNNTTYG 2 cut(s) 190, 222
AseI ATTAAT 1 cut(s) 1718
Asp718I GGTACC 1 cut(s) 1272
AspS9I GGNCC 7 cut(s) 436, 584, 637, 1159, 1579, 1841, 2010
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 8 cut(s) 94, 597, 829, 1187, 1193, 1440, 2162, 2473
AvaII GGWCC 6 cut(s) 436, 584, 637, 1159, 1841, 2010
BanI GGYRCC 1 cut(s) 1272
BanII GRGCYC 2 cut(s) 299, 717
BarI GAAGNNNNNNTAC 2 cut(s) 225, 257
BbsI GAAGAC 3 cut(s) 1131, 1912, 2741
Bbv12I GWGCWC 4 cut(s) 717, 1079, 1394, 2596
BbvI GCAGC 3 cut(s) 494, 2077, 2530
BccI CCATC 2 cut(s) 935, 1525
BciT130I CCWGG 3 cut(s) 288, 582, 1966
BciVI GTATCC 1 cut(s) 639
BclI TGATCA 1 cut(s) 819
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 3 cut(s) 582, 1943, 2500
BfaI CTAG 5 cut(s) 722, 1080, 2103, 2241, 2325
BfmI CTRYAG 3 cut(s) 1835, 2293, 2661
BfuI GTATCC 1 cut(s) 639
BglII AGATCT 1 cut(s) 1708
BisI GCNGC 4 cut(s) 483, 770, 2091, 2544
BlsI GCNGC 4 cut(s) 484, 771, 2092, 2545
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 288, 440, 582, 1966
Bme18I GGWCC 6 cut(s) 436, 584, 637, 1159, 1841, 2010
BmgT120I GGNCC 7 cut(s) 436, 584, 637, 1159, 1579, 1841, 2010
BmiI GGNNCC 8 cut(s) 1274, 1764, 1842, 1843, 2202, 2424, 2452, 2673
BmrFI CCNGG 4 cut(s) 288, 440, 582, 1966
BmrI ACTGGG 1 cut(s) 503
BmsI GCATC 5 cut(s) 780, 1078, 1273, 1495, 2374
BmuI ACTGGG 1 cut(s) 503
BpiI GAAGAC 3 cut(s) 1131, 1912, 2741
BplI GAGNNNNNCTC 8 cut(s) 1171, 1203, 1624, 1656, 1751, 1783, 2480, 2512
BpmI CTGGAG 1 cut(s) 2690
BpuEI CTTGAG 1 cut(s) 2507
BpuMI CCSGG 1 cut(s) 440
BsaJI CCNNGG 5 cut(s) 245, 318, 730, 1205, 1964
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 2074, 2075
Bse1I ACTGG 7 cut(s) 307, 451, 498, 639, 2113, 2445, 2577
Bse3DI GCAATG 3 cut(s) 546, 606, 2367
BseBI CCWGG 3 cut(s) 288, 582, 1966
BseDI CCNNGG 5 cut(s) 245, 318, 730, 1205, 1964
BseGI GGATG 3 cut(s) 139, 751, 2386
BseLI CCNNNNNNNGG 3 cut(s) 293, 2074, 2075
BseMI GCAATG 3 cut(s) 546, 606, 2367
BseMII CTCAG 3 cut(s) 1814, 2133, 2690
BseNI ACTGG 7 cut(s) 307, 451, 498, 639, 2113, 2445, 2577
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 3 cut(s) 494, 2077, 2530
BseYI CCCAGC 2 cut(s) 260, 2372
BsgI GTGCAG 2 cut(s) 1133, 2048
Bsh1236I CGCG 1 cut(s) 2023
BshFI GGCC 3 cut(s) 158, 1123, 1581
BshNI GGYRCC 1 cut(s) 1272
BsiHKAI GWGCWC 4 cut(s) 717, 1079, 1394, 2596
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 5 cut(s) 184, 1368, 1827, 2153, 2734
BslI CCNNNNNNNGG 3 cut(s) 293, 2074, 2075
BsmAI GTCTC 3 cut(s) 582, 1943, 2500
BsmFI GGGAC 5 cut(s) 184, 1368, 1827, 2153, 2734
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 3 cut(s) 158, 1123, 1581
Bsp1286I GDGCHC 5 cut(s) 299, 717, 1079, 1394, 2596
Bsp1407I TGTACA 3 cut(s) 342, 1792, 2364
Bsp143I GATC 3 cut(s) 819, 1708, 2187
BspACI CCGC 5 cut(s) 770, 1409, 2023, 2273, 2426
BspANI GGCC 3 cut(s) 158, 1123, 1581
BspCNI CTCAG 3 cut(s) 1813, 2132, 2689
BspFNI CGCG 1 cut(s) 2023
BspHI TCATGA 3 cut(s) 696, 1363, 1659
BspLI GGNNCC 8 cut(s) 1274, 1764, 1842, 1843, 2202, 2424, 2452, 2673
BspMAI CTGCAG 3 cut(s) 1839, 2297, 2665
BspQI GCTCTTC 1 cut(s) 1399
BspT107I GGYRCC 1 cut(s) 1272
BsrBI CCGCTC 1 cut(s) 772
BsrDI GCAATG 3 cut(s) 546, 606, 2367
BsrGI TGTACA 3 cut(s) 342, 1792, 2364
BsrI ACTGG 7 cut(s) 307, 451, 498, 639, 2113, 2445, 2577
BssECI CCNNGG 5 cut(s) 245, 318, 730, 1205, 1964
BssMI GATC 3 cut(s) 819, 1708, 2187
BssT1I CCWWGG 4 cut(s) 245, 318, 730, 1205
Bst2UI CCWGG 3 cut(s) 288, 582, 1966
Bst4CI ACNGT 5 cut(s) 17, 707, 1238, 1512, 2074
Bst6I CTCTTC 2 cut(s) 1399, 1647
BstAPI GCANNNNNTGC 1 cut(s) 2660
BstAUI TGTACA 3 cut(s) 342, 1792, 2364
BstC8I GCNNGC 2 cut(s) 514, 1992
BstDEI CTNAG 5 cut(s) 1569, 1800, 2003, 2119, 2676
BstF5I GGATG 3 cut(s) 139, 751, 2386
BstFNI CGCG 1 cut(s) 2023
BstKTI GATC 3 cut(s) 822, 1711, 2190
BstMAI GTCTC 3 cut(s) 582, 1943, 2500
BstMBI GATC 3 cut(s) 819, 1708, 2187
BstMWI GCNNNNNNNGC 7 cut(s) 31, 209, 266, 565, 1120, 2660, 2680
BstNI CCWGG 3 cut(s) 288, 582, 1966
BstNSI RCATGY 3 cut(s) 225, 1361, 1978
BstSCI CCNGG 4 cut(s) 286, 438, 580, 1964
BstSFI CTRYAG 3 cut(s) 1835, 2293, 2661
BstUI CGCG 1 cut(s) 2023
BstV1I GCAGC 3 cut(s) 494, 2077, 2530
BstV2I GAAGAC 3 cut(s) 1131, 1912, 2741
BstX2I RGATCY 1 cut(s) 1708
BstXI CCANNNNNNTGG 1 cut(s) 620
BstYI RGATCY 1 cut(s) 1708
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 3 cut(s) 158, 1123, 1581
BtsCI GGATG 3 cut(s) 139, 751, 2386
BtsI GCAGTG 4 cut(s) 41, 1000, 2060, 2302
BtsIMutI CAGTG 6 cut(s) 41, 632, 1000, 2060, 2106, 2302
Cac8I GCNNGC 2 cut(s) 514, 1992
CaiI CAGNNNCTG 1 cut(s) 2660
CciI TCATGA 3 cut(s) 696, 1363, 1659
Cfr13I GGNCC 7 cut(s) 436, 584, 637, 1159, 1579, 1841, 2010
CseI GACGC 1 cut(s) 2029
Csp6I GTAC 9 cut(s) 114, 142, 276, 343, 352, 1273, 1742, 1793, 2365
CviQI GTAC 9 cut(s) 114, 142, 276, 343, 352, 1273, 1742, 1793, 2365
DdeI CTNAG 5 cut(s) 1569, 1800, 2003, 2119, 2676
DpnI GATC 3 cut(s) 821, 1710, 2189
DpnII GATC 3 cut(s) 819, 1708, 2187
DraI TTTAAA 1 cut(s) 1254
DraIII CACNNNGTG 1 cut(s) 1351
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 1399, 1647
EarI CTCTTC 2 cut(s) 1399, 1647
EciI GGCGGA 1 cut(s) 1398
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 4 cut(s) 245, 318, 730, 1205
Eco24I GRGCYC 2 cut(s) 299, 717
Eco47I GGWCC 6 cut(s) 436, 584, 637, 1159, 1841, 2010
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 1843
EcoICRI GAGCTC 1 cut(s) 715
EcoO109I RGGNCCY 2 cut(s) 1579, 1841
EcoRI GAATTC 1 cut(s) 1819
EcoRII CCWGG 3 cut(s) 286, 580, 1964
EcoT14I CCWWGG 4 cut(s) 245, 318, 730, 1205
EcoT22I ATGCAT 2 cut(s) 6, 1911
EcoT38I GRGCYC 2 cut(s) 299, 717
ErhI CCWWGG 4 cut(s) 245, 318, 730, 1205
FalI AAGNNNNNCTT 2 cut(s) 1359, 1391
FaqI GGGAC 5 cut(s) 184, 1368, 1827, 2153, 2734
FauNDI CATATG 2 cut(s) 1110, 2430
FbaI TGATCA 1 cut(s) 819
Fnu4HI GCNGC 4 cut(s) 483, 770, 2091, 2544
FokI GGATG 3 cut(s) 146, 758, 2393
FriOI GRGCYC 2 cut(s) 299, 717
Fsp4HI GCNGC 4 cut(s) 483, 770, 2091, 2544
FspBI CTAG 5 cut(s) 722, 1080, 2103, 2241, 2325
GluI GCNGC 4 cut(s) 483, 770, 2091, 2544
GsaI CCCAGC 2 cut(s) 264, 2376
GsuI CTGGAG 1 cut(s) 2690
HaeIII GGCC 3 cut(s) 158, 1123, 1581
HapII CCGG 1 cut(s) 439
HgaI GACGC 1 cut(s) 2029
HincII GTYRAC 3 cut(s) 99, 253, 2578
HindII GTYRAC 3 cut(s) 99, 253, 2578
HindIII AAGCTT 1 cut(s) 1009
HinfI GANTC 8 cut(s) 107, 161, 182, 735, 755, 1096, 2117, 2300
HpaI GTTAAC 2 cut(s) 253, 2578
HpaII CCGG 1 cut(s) 439
HphI GGTGA 8 cut(s) 94, 597, 829, 1187, 1193, 1440, 2162, 2473
Hpy166II GTNNAC 6 cut(s) 99, 253, 754, 1795, 1901, 2578
Hpy8I GTNNAC 6 cut(s) 99, 253, 754, 1795, 1901, 2578
HpyAV CCTTC 9 cut(s) 427, 530, 736, 808, 980, 1009, 1030, 1287, 1867
HpyCH4III ACNGT 5 cut(s) 17, 707, 1238, 1512, 2074
HpyCH4IV ACGT 3 cut(s) 101, 1136, 1388
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 209, 266, 565, 1120, 2660, 2680
HpyF3I CTNAG 5 cut(s) 1569, 1800, 2003, 2119, 2676
HpySE526I ACGT 3 cut(s) 101, 1136, 1388
KflI GGGWCCC 1 cut(s) 1841
KpnI GGTACC 1 cut(s) 1276
Ksp22I TGATCA 1 cut(s) 819
KspAI GTTAAC 2 cut(s) 253, 2578
Kzo9I GATC 3 cut(s) 819, 1708, 2187
LguI GCTCTTC 1 cut(s) 1399
LmnI GCTCC 6 cut(s) 712, 1209, 1768, 2206, 2456, 2671
Lsp1109I GCAGC 3 cut(s) 494, 2077, 2530
LweI GCATC 5 cut(s) 780, 1078, 1273, 1495, 2374
MaeI CTAG 5 cut(s) 722, 1080, 2103, 2241, 2325
MaeII ACGT 3 cut(s) 101, 1136, 1388
MaeIII GTNAC 6 cut(s) 82, 603, 1024, 1199, 2150, 2699
MalI GATC 3 cut(s) 821, 1710, 2189
MbiI CCGCTC 1 cut(s) 772
MboI GATC 3 cut(s) 819, 1708, 2187
MfeI CAATTG 3 cut(s) 959, 1125, 1806
MflI RGATCY 1 cut(s) 1708
MhlI GDGCHC 5 cut(s) 299, 717, 1079, 1394, 2596
MlyI GAGTC 3 cut(s) 170, 749, 2111
MmeI TCCRAC 2 cut(s) 1988, 2593
Mph1103I ATGCAT 2 cut(s) 6, 1911
MseI TTAA 7 cut(s) 11, 252, 1253, 1718, 2016, 2160, 2577
MslI CAYNNNNRTG 7 cut(s) 851, 1362, 1368, 1688, 1884, 1914, 2195
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 4 cut(s) 288, 440, 582, 1966
MunI CAATTG 3 cut(s) 959, 1125, 1806
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 3 cut(s) 288, 582, 1966
MvnI CGCG 1 cut(s) 2023
MwoI GCNNNNNNNGC 7 cut(s) 31, 209, 266, 565, 1120, 2660, 2680
NciI CCSGG 1 cut(s) 440
NdeI CATATG 2 cut(s) 1110, 2430
NdeII GATC 3 cut(s) 819, 1708, 2187
NlaIV GGNNCC 8 cut(s) 1274, 1764, 1842, 1843, 2202, 2424, 2452, 2673
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 4 cut(s) 82, 603, 1199, 2150
NsiI ATGCAT 2 cut(s) 6, 1911
NspI RCATGY 3 cut(s) 225, 1361, 1978
OliI CACNNNNGTG 1 cut(s) 1688
PagI TCATGA 3 cut(s) 696, 1363, 1659
PciI ACATGT 1 cut(s) 1357
PciSI GCTCTTC 1 cut(s) 1399
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 5 cut(s) 107, 182, 735, 1096, 2300
PflFI GACNNNGTC 2 cut(s) 175, 2023
PfoI TCCNGGA 2 cut(s) 286, 580
PkrI GCNGC 4 cut(s) 484, 771, 2092, 2545
PleI GAGTC 3 cut(s) 169, 749, 2111
PpsI GAGTC 3 cut(s) 169, 749, 2111
PpuMI RGGWCCY 1 cut(s) 1841
PscI ACATGT 1 cut(s) 1357
PshBI ATTAAT 1 cut(s) 1718
PsiI TTATAA 1 cut(s) 2529
Psp124BI GAGCTC 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 1841
Psp6I CCWGG 3 cut(s) 286, 580, 1964
PspFI CCCAGC 2 cut(s) 260, 2372
PspGI CCWGG 3 cut(s) 286, 580, 1964
PspN4I GGNNCC 8 cut(s) 1274, 1764, 1842, 1843, 2202, 2424, 2452, 2673
PspPI GGNCC 7 cut(s) 436, 584, 637, 1159, 1579, 1841, 2010
PspPPI RGGWCCY 1 cut(s) 1841
PsrI GAACNNNNNNTAC 6 cut(s) 1855, 1887, 2406, 2438, 2649, 2681
PstI CTGCAG 3 cut(s) 1839, 2297, 2665
PstNI CAGNNNCTG 1 cut(s) 2660
PsuI RGATCY 1 cut(s) 1708
PsyI GACNNNGTC 2 cut(s) 175, 2023
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 9 cut(s) 115, 143, 277, 344, 353, 1274, 1743, 1794, 2366
RsaNI GTAC 9 cut(s) 114, 142, 276, 343, 352, 1273, 1742, 1793, 2365
RseI CAYNNNNRTG 7 cut(s) 851, 1362, 1368, 1688, 1884, 1914, 2195
SacI GAGCTC 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 1399
SaqAI TTAA 7 cut(s) 11, 252, 1253, 1718, 2016, 2160, 2577
SatI GCNGC 4 cut(s) 483, 770, 2091, 2544
Sau3AI GATC 3 cut(s) 819, 1708, 2187
Sau96I GGNCC 7 cut(s) 436, 584, 637, 1159, 1579, 1841, 2010
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 3 cut(s) 170, 749, 2111
ScrFI CCNGG 4 cut(s) 288, 440, 582, 1966
SduI GDGCHC 5 cut(s) 299, 717, 1079, 1394, 2596
SfaNI GCATC 5 cut(s) 780, 1078, 1273, 1495, 2374
SfcI CTRYAG 3 cut(s) 1835, 2293, 2661
SinI GGWCC 6 cut(s) 436, 584, 637, 1159, 1841, 2010
SmiMI CAYNNNNRTG 7 cut(s) 851, 1362, 1368, 1688, 1884, 1914, 2195
SmlI CTYRAG 1 cut(s) 2486
SmoI CTYRAG 1 cut(s) 2486
SsiI CCGC 5 cut(s) 770, 1409, 2023, 2273, 2426
SspI AATATT 4 cut(s) 412, 1229, 1928, 2050
SspMI CTAG 5 cut(s) 722, 1080, 2103, 2241, 2325
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 4 cut(s) 286, 438, 580, 1964
StyI CCWWGG 4 cut(s) 245, 318, 730, 1205
TaaI ACNGT 5 cut(s) 17, 707, 1238, 1512, 2074
TaiI ACGT 3 cut(s) 104, 1139, 1391
TaqI TCGA 3 cut(s) 348, 534, 541
TatI WGTACW 5 cut(s) 275, 342, 351, 1792, 2364
TauI GCSGC 1 cut(s) 772
TfiI GAWTC 5 cut(s) 107, 182, 735, 1096, 2300
Tru1I TTAA 7 cut(s) 11, 252, 1253, 1718, 2016, 2160, 2577
Tru9I TTAA 7 cut(s) 11, 252, 1253, 1718, 2016, 2160, 2577
TscAI CASTG 6 cut(s) 41, 639, 1000, 2067, 2113, 2302
TseFI GTSAC 4 cut(s) 82, 603, 1199, 2150
TseI GCWGC 3 cut(s) 482, 2090, 2543
Tsp45I GTSAC 4 cut(s) 82, 603, 1199, 2150
TspRI CASTG 6 cut(s) 41, 639, 1000, 2067, 2113, 2302
Tth111I GACNNNGTC 2 cut(s) 175, 2023
VpaK11BI GGWCC 6 cut(s) 436, 584, 637, 1159, 1841, 2010
VspI ATTAAT 1 cut(s) 1718
XapI RAATTY 7 cut(s) 148, 337, 916, 1001, 1811, 1819, 2726
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 3 cut(s) 225, 1361, 1978
XspI CTAG 5 cut(s) 722, 1080, 2103, 2241, 2325
ZrmI AGTACT 1 cut(s) 353
Zsp2I ATGCAT 2 cut(s) 6, 1911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.