Rh5CG168500

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000335
Physical Location & Seq
Forward (+)
15726026 .. 15727810
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG168500.1

Sequence Viewer

Length: 795 bp
ATGGCGGATGTGAAGATGGCTGATGCTGAGACGTTTGCTTTCCAGACCGAGATCAACCAGCTTCTGAGCTTGATCATCAATACGTTCTACAGCAACAAGGAGATTTTTCTTCGCGAGCTTATCAGCAATTCATCTGATGCTCTGGACAAGATTAGATTCAAGAGTCTTACGGATAAGAGCAAGCTTGATGCTCAGCCGGAGCTTTTCATCAGGATTGTTCCGGATAAGACCAACAATATTCTCTCCATCATTTATAGCGGGATCGGCATGACCAAAGCAGTGACAAGGGATGTCAATGGCGAGCAGCTTCGCAGGGGCACCAAGATCACTTTCTTCCTCAAGGAGGACCAGTTGGAATACTTGGAAGAGAGGAGGATCAAAGACCTTGTGAAGAAGCATTCCGAATTTATCAGCTATCCCATCTACTTGTGGACTGAGAAGACAGCTGAAAAGGAGATCAGTGATGATGAAGAGGATGAACCCAAGAAGGAAGAGAAGGGAGATATTGAGGATGTTGATGAGGACAAGGAGAAAGAAGGGAAGAAGAAGAAGAAGAAGATCAAGGAAGTTTCTCATGAGTGGGAACTCATCAACAAGCAGAAACCAATTTGGCTGCACAAGCCTAAGGAAATCACCAAGGATGAATATGCCTCATTCTACAAGAGCTTGACCAATGATTGGGAGGAACACCTTGCTGTGAAGCACTTCTCTGTGGAAGGACAGCTTGAATTCAAAGCCTCCTCTTTGTTCCAAAGAGGGCTCCATTCGACCTGTTTGATACCAGGAAGAAGATGA

Protein Analysis

264

Amino Acids

30.97

Weight (kDa)

5.84

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 119 - 246 1.2e-46 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 678
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 2 cut(s) 5, 258
AclWI GGATC 2 cut(s) 269, 383
AcsI RAATTY 2 cut(s) 404, 728
AfiI CCNNNNNNNGG 2 cut(s) 343, 678
AgsI TTSAA 3 cut(s) 160, 728, 733
AjnI CCWGG 1 cut(s) 781
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 269, 383
AlwNI CAGNNNCTG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 304, 613
ApoI RAATTY 2 cut(s) 404, 728
Asp700I GAANNNNTTC 1 cut(s) 704
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 625
AvaII GGWCC 1 cut(s) 346
AxyI CCTNAGG 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 762
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 2 cut(s) 316, 600
BccI CCATC 3 cut(s) 10, 254, 428
BciT130I CCWGG 1 cut(s) 783
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 2 cut(s) 305, 614
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 306, 615
Bme1390I CCNGG 1 cut(s) 783
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 319, 761
BmrFI CCNGG 1 cut(s) 783
BmsI GCATC 3 cut(s) 13, 127, 178
BpiI GAAGAC 1 cut(s) 446
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 636
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 678
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 5 cut(s) 13, 295, 481, 517, 646
BseLI CCNNNNNNNGG 2 cut(s) 343, 678
BseMII CTCAG 4 cut(s) 18, 56, 206, 426
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 2 cut(s) 385, 730
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 316, 600
BsgI GTGCAG 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 317
BsiSI CCGG 2 cut(s) 197, 221
BslI CCNNNNNNNGG 2 cut(s) 343, 678
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 320, 762
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
Bsp1720I GCTNAGC 1 cut(s) 192
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 2 cut(s) 5, 258
BspCNI CTCAG 4 cut(s) 19, 57, 205, 427
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 319, 761
BspPI GGATC 2 cut(s) 269, 383
BspT107I GGYRCC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 783
Bst6I CTCTTC 3 cut(s) 360, 465, 486
BstC8I GCNNGC 3 cut(s) 116, 182, 302
BstDEI CTNAG 5 cut(s) 27, 65, 192, 435, 624
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 5 cut(s) 13, 295, 481, 517, 646
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 7 cut(s) 54, 75, 264, 327, 378, 459, 561
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
BstMWI GCNNNNNNNGC 2 cut(s) 264, 619
BstNI CCWGG 1 cut(s) 783
BstSCI CCNGG 1 cut(s) 781
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 316, 600
BstV2I GAAGAC 1 cut(s) 446
Bsu36I CCTNAGG 1 cut(s) 624
BtsCI GGATG 5 cut(s) 13, 295, 481, 517, 646
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 466
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 116, 182, 302
CaiI CAGNNNCTG 1 cut(s) 64
CciI TCATGA 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 346
CviAII CATG 2 cut(s) 268, 575
DdeI CTNAG 5 cut(s) 27, 65, 192, 435, 624
DpnI GATC 7 cut(s) 53, 74, 263, 326, 377, 458, 560
DpnII GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
Eam1104I CTCTTC 3 cut(s) 360, 465, 486
EarI CTCTTC 3 cut(s) 360, 465, 486
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 762
Eco47I GGWCC 1 cut(s) 346
Eco81I CCTNAGG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoRI GAATTC 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 636
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 2 cut(s) 271, 578
FaiI YATR 4 cut(s) 255, 269, 576, 648
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FatI CATG 2 cut(s) 267, 574
FauI CCCGC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 305, 614
FokI GGATG 5 cut(s) 20, 302, 488, 524, 653
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 2 cut(s) 305, 614
GluI GCNGC 2 cut(s) 305, 614
HapII CCGG 2 cut(s) 197, 221
Hin1II CATG 2 cut(s) 271, 578
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 156, 163
HpaII CCGG 2 cut(s) 197, 221
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 3 cut(s) 66, 136, 403
Hpy188III TCNNGA 7 cut(s) 43, 113, 143, 160, 211, 221, 575
Hpy8I GTNNAC 1 cut(s) 432
HpyAV CCTTC 4 cut(s) 481, 490, 530, 710
HpyCH4IV ACGT 2 cut(s) 32, 83
HpyCH4V TGCA 1 cut(s) 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 619
HpyF3I CTNAG 5 cut(s) 27, 65, 192, 435, 624
HpySE526I ACGT 2 cut(s) 32, 83
Hsp92II CATG 2 cut(s) 271, 578
Kpn2I TCCGGA 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
LmnI GCTCC 2 cut(s) 199, 765
Lsp1109I GCAGC 2 cut(s) 316, 600
LweI GCATC 3 cut(s) 13, 127, 178
MaeII ACGT 2 cut(s) 32, 83
MaeIII GTNAC 1 cut(s) 280
MalI GATC 7 cut(s) 53, 74, 263, 326, 377, 458, 560
MboI GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
MhlI GDGCHC 2 cut(s) 320, 762
MluCI AATT 4 cut(s) 127, 404, 606, 728
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 333
MroI TCCGGA 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 2 cut(s) 197, 221
MspR9I CCNGG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 397
MvaI CCWGG 1 cut(s) 783
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 264, 619
NdeII GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
NlaIII CATG 2 cut(s) 271, 578
NlaIV GGNNCC 2 cut(s) 319, 761
NmuCI GTSAC 1 cut(s) 280
NruI TCGCGA 1 cut(s) 114
PagI TCATGA 1 cut(s) 574
PctI GAATGC 1 cut(s) 397
PdmI GAANNNNTTC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 678
PkrI GCNGC 2 cut(s) 306, 615
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 781
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 2 cut(s) 319, 761
PspPI GGNCC 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 446
RruI TCGCGA 1 cut(s) 114
SatI GCNGC 2 cut(s) 305, 614
Sau3AI GATC 7 cut(s) 51, 72, 261, 324, 375, 456, 558
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 783
SduI GDGCHC 2 cut(s) 320, 762
SfaNI GCATC 3 cut(s) 13, 127, 178
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 127, 404, 606, 728
SsiI CCGC 2 cut(s) 5, 258
SspI AATATT 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 781
StyI CCWWGG 1 cut(s) 636
TaiI ACGT 2 cut(s) 35, 86
TaqI TCGA 1 cut(s) 767
TaqII GACCGA 1 cut(s) 62
TasI AATT 4 cut(s) 127, 404, 606, 728
TfiI GAWTC 1 cut(s) 156
TscAI CASTG 2 cut(s) 285, 466
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 304, 613
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 5 cut(s) 120, 196, 483, 492, 657
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 285, 466
Van91I CCANNNNNTGG 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 404, 728
XmnI GAANNNNTTC 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.