Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

34365798 .. 34367605

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1279100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGGACGTTCAGATGGGCGAGGCTGAGACCTTCGCCTTCCAGGCCGAGATCAACCAGCTTCTGAGTTTGATCATCAACACCTTTTACAGCAACAAGGAGATCTTCCTTCGTGAACTCATCAGCAATTCGTCTGATGCTTTGGATAAAATTCGATTTGAGAGCCTTACAGACAAAAGCAAGCTCGATGCTCAGCCGGAGCTTTTCATCAGGATTGTGCCTGACAAGGTCAACAAAACCCTCTCCATCATCGACAGCGGTATTGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACAATTGCAAGGTCTGGAACCAAAGAGTTCATGGAGGCATTGCAAGCCGGAGCCCATTGGCGGAGCCACATAGAGACTAGGGTAGTCCAGGGCCCATCCTGGAAATACATTTATATTGATTATGTAGTAATTTTTGCAATAATATGCATGTGGTGTGTTGGTATGTCAGGTTTTAAAGGTTTCATTAGGTCCCGGGGTCGACGCCTGCTGACAGAAAGCTACTTTATGTCAAAAGTCACTAAAAATTGGACTTATTTCAAAAGATGGACTATAAAATTGGATTTCTTTCAAATTTTCCCTTATTTTTTTGTTAGTTCATATAAAACAAGGTATATATATTCGAGAGGAAGATTGAATGATATTAAAAAAAAAAGTATCGTAATAATAGATTATTTTTTTGTTAGTTCATATAAAACAAGATATATATATTCGAGAGGAAGATTCAATAATATTAAAAGAAAAATATCGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

258

Amino Acids

30.14

Weight (kDa)

9.78

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	3 cut(s)	5, 258, 361
AcsI	RAATTY	2 cut(s)	150, 591
AcyI	GRCGYC	1 cut(s)	502
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	559, 590, 655, 745
AjnI	CCWGG	3 cut(s)	42, 387, 398
AluBI	AGCT	4 cut(s)	61, 184, 202, 519
AluI	AGCT	4 cut(s)	61, 184, 202, 519
Alw26I	GTCTC	2 cut(s)	23, 368
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	2 cut(s)	45, 391
ApaI	GGGCCC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	150, 591
AspS9I	GGNCC	3 cut(s)	391, 392, 489
AsuC2I	CCSGG	2 cut(s)	493, 494
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	355, 395
BccI	CCATC	4 cut(s)	10, 254, 403, 558
BciT130I	CCWGG	3 cut(s)	44, 389, 400
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	2 cut(s)	493, 494
BcoDI	GTCTC	2 cut(s)	23, 368
BfaI	CTAG	1 cut(s)	378
BglI	GCCNNNNNGGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	192
Bme1390I	CCNGG	5 cut(s)	44, 389, 400, 493, 494
Bme18I	GGWCC	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	3 cut(s)	391, 392, 489
BmiI	GGNNCC	5 cut(s)	319, 352, 365, 393, 491
BmrFI	CCNGG	5 cut(s)	44, 389, 400, 493, 494
BmsI	GCATC	2 cut(s)	127, 178
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuMI	CCSGG	2 cut(s)	493, 494
BsaHI	GRCGYC	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	388, 492, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	338
BseBI	CCWGG	3 cut(s)	44, 389, 400
BseDI	CCNNGG	3 cut(s)	388, 492, 493
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	338
BseMII	CTCAG	3 cut(s)	18, 56, 206
BseSI	GKGCMC	1 cut(s)	395
BshFI	GGCC	2 cut(s)	47, 393
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	197, 348, 493
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	2 cut(s)	23, 368
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	47, 393
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	492
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	355, 395
Bsp143I	GATC	3 cut(s)	51, 72, 102
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	3 cut(s)	5, 258, 361
BspANI	GGCC	2 cut(s)	47, 393
BspCNI	CTCAG	3 cut(s)	19, 57, 205
BspLI	GGNNCC	5 cut(s)	319, 352, 365, 393, 491
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	388, 492, 493
BssMI	GATC	3 cut(s)	51, 72, 102
BssNI	GRCGYC	1 cut(s)	502
Bst2UI	CCWGG	3 cut(s)	44, 389, 400
BstACI	GRCGYC	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	182, 345, 506
BstDEI	CTNAG	3 cut(s)	27, 65, 192
BstF5I	GGATG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	54, 75, 105
BstMAI	GTCTC	2 cut(s)	23, 368
BstMBI	GATC	3 cut(s)	51, 72, 102
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 264, 344
BstNI	CCWGG	3 cut(s)	44, 389, 400
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	5 cut(s)	42, 387, 398, 491, 492
BstSLI	GKGCMC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	47, 393
BtsCI	GGATG	1 cut(s)	395
Cac8I	GCNNGC	3 cut(s)	182, 345, 506
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	391, 392, 489
Cfr9I	CCCGGG	1 cut(s)	492
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	268, 331, 448
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	3 cut(s)	27, 65, 192
DpnI	GATC	3 cut(s)	53, 74, 104
DpnII	GATC	3 cut(s)	51, 72, 102
DraI	TTTAAA	1 cut(s)	475
EciI	GGCGGA	2 cut(s)	20, 376
Eco24I	GRGCYC	2 cut(s)	355, 395
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	492
EcoO109I	RGGNCCY	2 cut(s)	391, 489
EcoRII	CCWGG	3 cut(s)	42, 387, 398
EcoT22I	ATGCAT	1 cut(s)	449
EcoT38I	GRGCYC	2 cut(s)	355, 395
FaeI	CATG	3 cut(s)	271, 334, 451
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	267, 330, 447
FbaI	TGATCA	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	499
FokI	GGATG	1 cut(s)	382
FriOI	GRGCYC	2 cut(s)	355, 395
FspBI	CTAG	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	47, 393
HapII	CCGG	3 cut(s)	197, 348, 493
HgaI	GACGC	1 cut(s)	510
Hin1I	GRCGYC	1 cut(s)	502
Hin1II	CATG	3 cut(s)	271, 334, 451
HincII	GTYRAC	2 cut(s)	232, 500
HindII	GTYRAC	2 cut(s)	232, 500
HinfI	GANTC	1 cut(s)	741
HpaII	CCGG	3 cut(s)	197, 348, 493
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	4 cut(s)	116, 232, 289, 500
Hpy188I	TCNGA	3 cut(s)	15, 66, 136
Hpy188III	TCNNGA	5 cut(s)	113, 211, 315, 642, 732
Hpy8I	GTNNAC	4 cut(s)	116, 232, 289, 500
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	3 cut(s)	43, 49, 119
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	308, 343, 437, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 264, 344
HpyF3I	CTNAG	3 cut(s)	27, 65, 192
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	271, 334, 451
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	51, 72, 102
LmnI	GCTCC	3 cut(s)	199, 350, 363
LweI	GCATC	2 cut(s)	127, 178
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	3 cut(s)	53, 74, 104
MboI	GATC	3 cut(s)	51, 72, 102
MboII	GAAGA	3 cut(s)	97, 660, 750
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	355, 395
MluCI	AATT	7 cut(s)	127, 150, 303, 429, 544, 575, 591
MnlI	CCTC	5 cut(s)	16, 251, 328, 638, 728
Mph1103I	ATGCAT	1 cut(s)	449
MseI	TTAA	3 cut(s)	474, 663, 753
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	197, 348, 493
MspR9I	CCNGG	5 cut(s)	44, 389, 400, 493, 494
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	3 cut(s)	44, 389, 400
MwoI	GCNNNNNNNGC	3 cut(s)	44, 264, 344
NciI	CCSGG	2 cut(s)	493, 494
NdeII	GATC	3 cut(s)	51, 72, 102
NlaIII	CATG	3 cut(s)	271, 334, 451
NlaIV	GGNNCC	5 cut(s)	319, 352, 365, 393, 491
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	535
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	741
PflFI	GACNNNGTC	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	398
PpuMI	RGGWCCY	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	489
Psp6I	CCWGG	3 cut(s)	42, 387, 398
PspGI	CCWGG	3 cut(s)	42, 387, 398
PspN4I	GGNNCC	5 cut(s)	319, 352, 365, 393, 491
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	391, 392, 489
PspPPI	RGGWCCY	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	474, 663, 753
Sau3AI	GATC	3 cut(s)	51, 72, 102
Sau96I	GGNCC	3 cut(s)	391, 392, 489
ScrFI	CCNGG	5 cut(s)	44, 389, 400, 493, 494
SduI	GDGCHC	2 cut(s)	355, 395
SfaNI	GCATC	2 cut(s)	127, 178
SinI	GGWCC	1 cut(s)	489
SmaI	CCCGGG	1 cut(s)	494
Sse9I	AATT	7 cut(s)	127, 150, 303, 429, 544, 575, 591
SsiI	CCGC	3 cut(s)	5, 258, 361
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	5 cut(s)	42, 387, 398, 491, 492
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	6 cut(s)	154, 186, 252, 499, 641, 731
TasI	AATT	7 cut(s)	127, 150, 303, 429, 544, 575, 591
TfiI	GAWTC	1 cut(s)	741
Tru1I	TTAA	3 cut(s)	474, 663, 753
Tru9I	TTAA	3 cut(s)	474, 663, 753
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	5 cut(s)	196, 319, 472, 606, 696
TspMI	CCCGGG	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	2 cut(s)	150, 591
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 328
XmaI	CCCGGG	1 cut(s)	492
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.