Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

67223835 .. 67224889

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG407700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGACCAAAGCTGATTTGGTGAACAACTTGGGTACAAGGTCGGGGACCAAGGTGTTAATGGAGGCATTGGCATCCGGAGCGTCTGATGTGAGCATGATTGGAAAGTTTGGTATTGGCTTTTACTCGGCATATCTTGTTGCGGAGAAGTTCATTGTGACTACAAAGCACAATGACGATGAACAATACATTTGGGAATCCCATGCTGGTGGTTCCTTCACCGTGACAAGGGATGTCAATGGTGAGCAGCTTGGAAGGGGAAACAAGATTACCCTCTTTCTCAAGGAGGACCAGTTGGAATACTTGGAAGAGATGAGGATCACAGACCTTGTGAAGAAGCATTCCGAATTCATCAGCTATCCCATCTACTTGTGGATTGAGGTCGAGGAAGCCAAGAAGGAAGAGGAAGGAGCTATTGGGGAAGTTGACGAGGATAAGGAGAAAGAATCAAAGAAGAATAAGGAAGTTTCTCACGAATGGGAACTCATCAACAAGCAGAAACCCATCTGGCTGCGCAAGCCGGAGGAGATTACCAAGGGTGAGTATGCTTTATTCTACAAGAGCTTGACCTATGATTGGGAGGACTACCTTGCAGTGAAGCATTTCTCTGTTGAAGGCCAGCTGAATTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

210

Amino Acids

24.15

Weight (kDa)

4.99

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	99 - 208	2.4e-32	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	344, 622
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	225, 573
AgsI	TTSAA	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	6 cut(s)	11, 247, 354, 410, 561, 619
AluI	AGCT	6 cut(s)	11, 247, 354, 410, 561, 619
AlwI	GGATC	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	2 cut(s)	244, 508
ApoI	RAATTY	2 cut(s)	344, 622
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	45, 286
AsuHPI	GGTGA	4 cut(s)	31, 208, 251, 548
AvaII	GGWCC	2 cut(s)	45, 286
BbvI	GCAGC	2 cut(s)	256, 495
BccI	CCATC	2 cut(s)	368, 509
BfaI	CTAG	1 cut(s)	627
BisI	GCNGC	2 cut(s)	245, 509
BlsI	GCNGC	2 cut(s)	246, 510
Bme18I	GGWCC	2 cut(s)	45, 286
BmgT120I	GGNCC	2 cut(s)	45, 286
BmiI	GGNNCC	2 cut(s)	46, 211
BmsI	GCATC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	48, 531
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 573
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	314
BseAI	TCCGGA	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	48, 531
BseGI	GGATG	2 cut(s)	71, 235
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	225, 573
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	256, 495
BshFI	GGCC	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	75, 518
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	225, 573
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	615
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	615
BspEI	TCCGGA	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	46, 211
BspPI	GGATC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	48, 531
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	48, 531
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	2 cut(s)	300, 393
BstC8I	GCNNGC	2 cut(s)	515, 617
BstF5I	GGATG	2 cut(s)	71, 235
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 514
BstV1I	GCAGC	2 cut(s)	256, 495
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	71, 235
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	515, 617
CfoI	GCGC	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	45, 286
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	94, 200
CviQI	GTAC	1 cut(s)	33
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	300, 393
EarI	CTCTTC	2 cut(s)	300, 393
Eco130I	CCWWGG	2 cut(s)	48, 531
Eco47I	GGWCC	2 cut(s)	45, 286
EcoRI	GAATTC	2 cut(s)	344, 622
EcoT14I	CCWWGG	2 cut(s)	48, 531
ErhI	CCWWGG	2 cut(s)	48, 531
FaeI	CATG	2 cut(s)	97, 203
FaiI	YATR	5 cut(s)	95, 130, 201, 543, 570
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	93, 199
Fnu4HI	GCNGC	2 cut(s)	245, 509
FokI	GGATG	2 cut(s)	58, 242
Fsp4HI	GCNGC	2 cut(s)	245, 509
FspBI	CTAG	1 cut(s)	627
FspI	TGCGCA	1 cut(s)	512
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	2 cut(s)	245, 509
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	2 cut(s)	75, 518
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	97, 203
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	194, 443
HpaII	CCGG	2 cut(s)	75, 518
HphI	GGTGA	4 cut(s)	31, 208, 251, 548
Hpy166II	GTNNAC	2 cut(s)	22, 424
Hpy188I	TCNGA	2 cut(s)	85, 343
Hpy188III	TCNNGA	2 cut(s)	75, 470
Hpy8I	GTNNAC	2 cut(s)	22, 424
HpyAV	CCTTC	5 cut(s)	223, 246, 388, 398, 605
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 514
Hsp92II	CATG	2 cut(s)	97, 203
HspAI	GCGC	1 cut(s)	511
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	77, 407
LpnPI	CCDG	6 cut(s)	88, 189, 302, 490, 531, 629
Lsp1109I	GCAGC	2 cut(s)	256, 495
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	154, 220
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	4 cut(s)	317, 343, 410, 463
MluCI	AATT	2 cut(s)	344, 622
MmeI	TCCRAC	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	2 cut(s)	75, 518
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	77, 514
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	2 cut(s)	97, 203
NlaIV	GGNNCC	2 cut(s)	46, 211
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	2 cut(s)	154, 220
NsbI	TGCGCA	1 cut(s)	512
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	194, 443
PkrI	GCNGC	2 cut(s)	246, 510
PspN4I	GGNNCC	2 cut(s)	46, 211
PspPI	GGNCC	2 cut(s)	45, 286
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	245, 509
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	45, 286
SfaNI	GCATC	1 cut(s)	80
SinI	GGWCC	2 cut(s)	45, 286
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	344, 622
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	627
StyI	CCWWGG	2 cut(s)	48, 531
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	344, 622
TfiI	GAWTC	2 cut(s)	194, 443
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	154, 220
TseI	GCWGC	2 cut(s)	244, 508
Tsp45I	GTSAC	2 cut(s)	154, 220
TspDTI	ATGAA	3 cut(s)	139, 192, 337
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	2 cut(s)	45, 286
XapI	RAATTY	2 cut(s)	344, 622
XcmI	CCANNNNNNNNNTGG	2 cut(s)	13, 55
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.