Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

51980123 .. 51980446

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG394700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGGATCACAGACCTTGTGAAGAAGCATTCCGAATTCATCAGCTATCCCATCTACTTGTGGATTGAGGTCGAGGAAGCCAAGAAGGAAGAGGAAGGAGCTATTGGGGAAGTTGACGAGGATAAGGAGAAAGAATCAAAGAAGAATAAGGAAGTTTCTCACGAATGGGAACTCATCAACAAGCAGAAACCCATCTGGCTGCGCAAGCCGGAGGAGATTACCAAGGGTGAGTATGCTTTATTCTACAAGAGCTTGACCTATGATTGGGAGGACTACCTTGCAGTGAAGCATTTCTCTGTTGAAGGCCAGCTGAATTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

107

Amino Acids

12.8

Weight (kDa)

5.05

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	2 - 105	7.5e-31	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	35, 313
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	4 cut(s)	45, 101, 252, 310
AluI	AGCT	4 cut(s)	45, 101, 252, 310
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	35, 313
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	2 cut(s)	59, 200
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	206, 308
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	206, 308
CfoI	GCGC	1 cut(s)	204
CviJI	RGCY	8 cut(s)	45, 80, 101, 199, 208, 252, 306, 310
CviKI_1	RGCY	8 cut(s)	45, 80, 101, 199, 208, 252, 306, 310
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	222
EcoRI	GAATTC	2 cut(s)	35, 313
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	2 cut(s)	234, 261
Fnu4HI	GCNGC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	318
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	79, 89, 296
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	3 cut(s)	181, 222, 320
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	318
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	34, 101, 154
MluCI	AATT	2 cut(s)	35, 313
MnlI	CCTC	6 cut(s)	61, 67, 85, 112, 205, 262
MroXI	GAANNNNTTC	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	203
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	310
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	6
SetI	ASST	8 cut(s)	18, 47, 72, 103, 254, 260, 279, 312
Sse9I	AATT	2 cut(s)	35, 313
SspMI	CTAG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	222
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	35, 313
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	288
XapI	RAATTY	2 cut(s)	35, 313
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.