FvH4_3g23932

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000705
Physical Location & Seq
Reverse (-)
17020141 .. 17021293
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23932.t1

Sequence Viewer

Length: 909 bp
ATGTCTATCAAAGGAGCTAATTGGACAACAAAAGAAGATGAAGCTCTTTGCATTTCGTACATCAAAGTGTCCGAGAACTCCGACAAAGGTACAAGTCAAAAAGAAACCGGCCTTTGGAAACAAGTGGCGCAAAAATTCAAAGAATATTTCAATGGTGCTCCTCCAAATGTTAGAAACTTTGAGAGTTGTAAATCTCGATGGCAAAAACACCTCTTCCCACCAATGAACAAATGGCATACATGCGTCAAACGCGCCGAGAGGAGGATCCATAGTGGAGCCAATCAATCCGACCAACAACATTTAGCCGAGGATTTTTACAAAGAAGAAATGGGTGGAAAAATTTTTCGCCATCATAGTTGTTACAATTTGTGTTGTGATACTTGGGTCACGTTTGATGATCCACCACAAGAAAACTTTGGTCCACCATCGGTTCAAAGAAACCTCCCTATTTCCGTAGATGATGATGAAGATGATGATGCAAATGGATCTACTCCACCATCAACTTCGATTCCGGAACCCCTTCCTAGGCCAATGGGTCGAAATACCGCAAGAAGAAAGCAATTGAAAGCCAAAGAAAAGGAGGAGAAAACCTTTCAAGAAAAATTGTTGGTTAACATAGAGCGGATGAGAGAAGAAAACATCAAGGCGGAAGAGGCAAAAACATTGAGAGAGAAAATGAAGGAAGAACGACGAGAAAGGGATAGGAATGAAGCCATTTTAATGATGCAAATCACGGATTATTCTCCAAGGAGTAAGAAATACTTTGATGATTGGAAGAGGGACGCTCTTGAAAGTTTAAGTGCACGGGAGTTATTTTCTAATTCCTCCACAACATCCAATGACTATCATCCACATATGGGAACCGAAGATGCATATCATCCACATATGGCATCTGAAGACGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

35.27

Weight (kDa)

6.0

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 115 - 256 9e-06 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 622
AccII CGCG 1 cut(s) 252
AccIII TCCGGA 1 cut(s) 511
AciI CCGC 3 cut(s) 546, 622, 647
AclWI GGATC 4 cut(s) 259, 272, 392, 493
AcsI RAATTY 2 cut(s) 134, 339
AfaI GTAC 2 cut(s) 59, 91
AfiI CCNNNNNNNGG 4 cut(s) 114, 261, 525, 857
AgsI TTSAA 6 cut(s) 139, 151, 434, 565, 596, 791
AluBI AGCT 2 cut(s) 17, 44
AluI AGCT 2 cut(s) 17, 44
Alw21I GWGCWC 2 cut(s) 160, 805
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 4 cut(s) 259, 272, 392, 493
Aor13HI TCCGGA 1 cut(s) 511
AoxI GGCC 2 cut(s) 109, 527
ApaLI GTGCAC 1 cut(s) 801
ApoI RAATTY 2 cut(s) 134, 339
Asp700I GAANNNNTTC 1 cut(s) 519
AspA2I CCTAGG 1 cut(s) 524
AspLEI GCGC 2 cut(s) 130, 254
AspS9I GGNCC 1 cut(s) 419
AvaII GGWCC 1 cut(s) 419
AvrII CCTAGG 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 805
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BamHI GGATCC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 160, 805
BccI CCATC 4 cut(s) 192, 357, 433, 505
BfaI CTAG 1 cut(s) 525
BlnI CCTAGG 1 cut(s) 524
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 4 cut(s) 266, 277, 516, 862
BmsI GCATC 4 cut(s) 466, 714, 859, 899
BpiI GAAGAC 1 cut(s) 903
BplI GAGNNNNNCTC 2 cut(s) 769, 801
BsaBI GATNNNNATC 2 cut(s) 728, 873
BsaJI CCNNGG 3 cut(s) 306, 524, 746
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 261, 525, 857
Bse118I RCCGGY 1 cut(s) 107
Bse8I GATNNNNATC 2 cut(s) 728, 873
BseAI TCCGGA 1 cut(s) 511
BseDI CCNNGG 3 cut(s) 306, 524, 746
BseGI GGATG 4 cut(s) 630, 833, 847, 877
BseJI GATNNNNATC 2 cut(s) 728, 873
BseLI CCNNNNNNNGG 4 cut(s) 114, 261, 525, 857
BseRI GAGGAG 3 cut(s) 150, 274, 596
BseSI GKGCMC 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 111, 529
BsiHKAI GWGCWC 2 cut(s) 160, 805
BsiSI CCGG 2 cut(s) 108, 512
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 4 cut(s) 114, 261, 525, 857
BsmFI GGGAC 1 cut(s) 794
BsnI GGCC 2 cut(s) 111, 529
Bsp1286I GDGCHC 2 cut(s) 160, 805
Bsp13I TCCGGA 1 cut(s) 511
Bsp143I GATC 3 cut(s) 264, 397, 485
BspACI CCGC 3 cut(s) 546, 622, 647
BspANI GGCC 2 cut(s) 111, 529
BspEI TCCGGA 1 cut(s) 511
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 4 cut(s) 266, 277, 516, 862
BspPI GGATC 4 cut(s) 259, 272, 392, 493
BsrBI CCGCTC 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 306, 524, 746
BssMI GATC 3 cut(s) 264, 397, 485
BssT1I CCWWGG 2 cut(s) 524, 746
Bst6I CTCTTC 3 cut(s) 218, 645, 770
BstF5I GGATG 4 cut(s) 630, 833, 847, 877
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 2 cut(s) 130, 254
BstKTI GATC 3 cut(s) 267, 400, 488
BstMBI GATC 3 cut(s) 264, 397, 485
BstMWI GCNNNNNNNGC 2 cut(s) 249, 653
BstNSI RCATGY 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 805
BstUI CGCG 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 903
BstX2I RGATCY 2 cut(s) 264, 485
BstYI RGATCY 2 cut(s) 264, 485
BsuRI GGCC 2 cut(s) 111, 529
BtsCI GGATG 4 cut(s) 630, 833, 847, 877
CfoI GCGC 2 cut(s) 130, 254
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 2 cut(s) 232, 791
Csp6I GTAC 2 cut(s) 58, 90
CviAII CATG 1 cut(s) 240
CviJI RGCY 8 cut(s) 17, 44, 111, 278, 305, 529, 569, 713
CviKI_1 RGCY 8 cut(s) 17, 44, 111, 278, 305, 529, 569, 713
CviQI GTAC 2 cut(s) 58, 90
DpnI GATC 3 cut(s) 266, 399, 487
DpnII GATC 3 cut(s) 264, 397, 485
Eam1104I CTCTTC 3 cut(s) 218, 645, 770
EarI CTCTTC 3 cut(s) 218, 645, 770
EciI GGCGGA 1 cut(s) 662
Eco130I CCWWGG 2 cut(s) 524, 746
Eco47I GGWCC 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 524, 746
EcoT22I ATGCAT 1 cut(s) 874
ErhI CCWWGG 2 cut(s) 524, 746
FaeI CATG 1 cut(s) 243
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FaqI GGGAC 1 cut(s) 794
FatI CATG 1 cut(s) 239
FauNDI CATATG 2 cut(s) 855, 885
FokI GGATG 4 cut(s) 637, 820, 834, 864
FspBI CTAG 1 cut(s) 525
GlaI GCGC 2 cut(s) 129, 253
HaeIII GGCC 2 cut(s) 111, 529
HapII CCGG 2 cut(s) 108, 512
HgaI GACGC 2 cut(s) 232, 791
HhaI GCGC 2 cut(s) 130, 254
Hin1II CATG 1 cut(s) 243
Hin6I GCGC 2 cut(s) 128, 252
HinP1I GCGC 2 cut(s) 128, 252
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 1 cut(s) 508
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 2 cut(s) 108, 512
Hpy166II GTNNAC 3 cut(s) 422, 613, 803
Hpy188I TCNGA 4 cut(s) 73, 82, 289, 895
Hpy188III TCNNGA 4 cut(s) 195, 512, 596, 788
Hpy8I GTNNAC 3 cut(s) 422, 613, 803
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 2 cut(s) 530, 673
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 5 cut(s) 51, 479, 727, 803, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 653
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 1 cut(s) 243
HspAI GCGC 2 cut(s) 128, 252
Kpn2I TCCGGA 1 cut(s) 511
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 3 cut(s) 264, 397, 485
LmnI GCTCC 3 cut(s) 14, 163, 275
LpnPI CCDG 2 cut(s) 121, 525
LweI GCATC 4 cut(s) 466, 714, 859, 899
MaeI CTAG 1 cut(s) 525
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 359, 385
MalI GATC 3 cut(s) 266, 399, 487
MbiI CCGCTC 1 cut(s) 622
MboI GATC 3 cut(s) 264, 397, 485
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 2 cut(s) 264, 485
MhlI GDGCHC 2 cut(s) 160, 805
MluCI AATT 7 cut(s) 19, 134, 339, 364, 560, 602, 820
MmeI TCCRAC 2 cut(s) 105, 312
Mph1103I ATGCAT 1 cut(s) 874
MroI TCCGGA 1 cut(s) 511
MroXI GAANNNNTTC 1 cut(s) 519
MseI TTAA 3 cut(s) 612, 719, 797
MslI CAYNNNNRTG 2 cut(s) 65, 719
MspI CCGG 2 cut(s) 108, 512
MunI CAATTG 1 cut(s) 560
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 249, 653
NdeI CATATG 2 cut(s) 855, 885
NdeII GATC 3 cut(s) 264, 397, 485
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 4 cut(s) 266, 277, 516, 862
NmeAIII GCCGAG 2 cut(s) 280, 331
NmuCI GTSAC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 508
PspN4I GGNNCC 4 cut(s) 266, 277, 516, 862
PspPI GGNCC 1 cut(s) 419
PsuI RGATCY 2 cut(s) 264, 485
RsaI GTAC 2 cut(s) 59, 91
RsaNI GTAC 2 cut(s) 58, 90
RseI CAYNNNNRTG 2 cut(s) 65, 719
SaqAI TTAA 3 cut(s) 612, 719, 797
Sau3AI GATC 3 cut(s) 264, 397, 485
Sau96I GGNCC 1 cut(s) 419
SduI GDGCHC 2 cut(s) 160, 805
SetI ASST 7 cut(s) 19, 46, 91, 213, 392, 444, 593
SfaNI GCATC 4 cut(s) 466, 714, 859, 899
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 2 cut(s) 65, 719
Sse9I AATT 7 cut(s) 19, 134, 339, 364, 560, 602, 820
SsiI CCGC 3 cut(s) 546, 622, 647
SspI AATATT 1 cut(s) 146
SspMI CTAG 1 cut(s) 525
StyI CCWWGG 2 cut(s) 524, 746
TaiI ACGT 1 cut(s) 392
TaqI TCGA 3 cut(s) 196, 506, 538
TasI AATT 7 cut(s) 19, 134, 339, 364, 560, 602, 820
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 3 cut(s) 612, 719, 797
Tru9I TTAA 3 cut(s) 612, 719, 797
TseFI GTSAC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 5 cut(s) 54, 239, 480, 692, 723
TspGWI ACGGA 2 cut(s) 442, 749
VneI GTGCAC 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 134, 339
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XmaJI CCTAGG 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.