MD17G1218600.v1.1

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000705
Physical Location & Seq
Reverse (-)
26580863 .. 26584350
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1218600.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGACAAGGGGAAAATCGTTCACGCTGGATCAAGATGTGGCTGTTTGTAATGCTCGGTTAAGTGTCTCTCAGGATCCGCTCAATGTTGTTTCGCAACCTAAATGTATTTCCTGGGATCAAGTATACCAAAAATATGTTGAGATAACCGGTGATCAAAATGAGCGATCGCGATGTTCTGTCCAGTCTAGATGGAAAATAATTCTTGGAAGTTGCAATCAGTTTCATGAATGTCTTACCAAAATAGAAGAAAAACAAAGTGGATTGACGGAATCTAACAAGGTTCTTCAAGCAAATATATTGTACTTGAAGCTTGAGAAGAAACGTTTTGCGTTCAATCATTGCTGGGAAATTTTGCAACATAACATCAAATGGAAAGGTTTGACACCGGCAAAGAGGTCTGATATTGATACTATGGTTGCAGACTGGTATGATCCTCCTATTGTGGCTGCAAACCTGAACATCACTTCCTCACCGATGAGGTCTGGTACTCGTACTATGGCTACAGACCCAAATGTTGATTCCTCACCCAAGAGGTCCGATCCTCCTACTATTGCTGCAAACTTGAACATCAATTCCTCACCGAAGAGGTCTGATCCTCATTCTATAGCTACAAACCCGAAGAACAATTCCTCATACTCCTTACAATCAAAGGAGACTCTCGTCTCACAGGACACTGACAAAGATCCATATTATACAGCTGAATTTCTTAAAAGGAAACGATCCAGAAGAGCAGAAAAAGAAGCATACAAGAGAAGCAAGGTAGTAGAAACTCTGGATTCTCGTTTATGTGACGTGATGGAGAAGCTTACCAAACAATTGGCCGAAGCAGATGACAGAAAGGCGAAAATTGCAGAAAGAAAGGTAAAGGTGATGGAGGAAGCGAATGAAAGGGAGCAAAGAGAGCATGATGACCGAATTATGAGTATGGACACCACCAACATGGAGCCACGCGCAAGAGCTTACTACGAGCAGCGAAAGAATGATGTTTATTTCAAAACTATGGCACACAGTAAAAACTCCTCCAATATGGATCTTCACACAATAGCTCACTACGATCATAGCGATATTTATGCGAAAATGATGGCACGCGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

366

Amino Acids

42.07

Weight (kDa)

8.94

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 107 - 328 1.3e-11 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 123
AccII CGCG 3 cut(s) 169, 951, 1089
AciI CCGC 1 cut(s) 77
AclI AACGTT 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 2 cut(s) 348, 701
AfaI GTAC 3 cut(s) 302, 487, 493
AgeI ACCGGT 1 cut(s) 146
AgsI TTSAA 5 cut(s) 287, 307, 334, 565, 994
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 502, 534
AloI GAACNNNNNNTCC 4 cut(s) 449, 481, 557, 589
AluBI AGCT 6 cut(s) 310, 608, 698, 805, 959, 1046
AluI AGCT 6 cut(s) 310, 608, 698, 805, 959, 1046
Alw26I GTCTC 3 cut(s) 70, 647, 667
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 3 cut(s) 446, 554, 970
ApoI RAATTY 2 cut(s) 348, 701
AsiGI ACCGGT 1 cut(s) 146
AsiSI GCGATCGC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 953
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 5 cut(s) 161, 462, 516, 570, 880
AvaII GGWCC 1 cut(s) 534
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BamHI GGATCC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 433, 541, 982
BccI CCATC 4 cut(s) 183, 790, 865, 1075
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 3 cut(s) 70, 647, 667
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 2 cut(s) 501, 603
BisI GCNGC 3 cut(s) 447, 555, 971
BlsI GCNGC 3 cut(s) 448, 556, 972
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 534
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 2 cut(s) 75, 945
BmrFI CCNGG 1 cut(s) 112
BoxI GACNNNNGTC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 146
Bse118I RCCGGY 2 cut(s) 146, 385
Bse1I ACTGG 2 cut(s) 181, 428
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 181, 428
BseRI GAGGAG 1 cut(s) 1009
BseXI GCAGC 3 cut(s) 433, 541, 982
BseYI CCCAGC 1 cut(s) 342
Bsh1236I CGCG 3 cut(s) 169, 951, 1089
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 821
BshTI ACCGGT 1 cut(s) 146
BsiEI CGRYCG 1 cut(s) 167
BsiSI CCGG 2 cut(s) 147, 386
BsmAI GTCTC 3 cut(s) 70, 647, 667
BsmBI CGTCTC 1 cut(s) 667
BsnI GGCC 1 cut(s) 821
Bsp68I TCGCGA 1 cut(s) 169
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 3 cut(s) 169, 951, 1089
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 75, 945
BspQI GCTCTTC 1 cut(s) 721
BsrBI CCGCTC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 2 cut(s) 146, 385
BsrI ACTGG 2 cut(s) 181, 428
BssAI RCCGGY 2 cut(s) 146, 385
BssECI CCNNGG 1 cut(s) 111
BssNAI GTATAC 1 cut(s) 124
Bst1107I GTATAC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 1010
Bst6I CTCTTC 2 cut(s) 578, 721
BstC8I GCNNGC 1 cut(s) 1087
BstDEI CTNAG 1 cut(s) 69
BstFNI CGCG 3 cut(s) 169, 951, 1089
BstHHI GCGC 1 cut(s) 953
BstMAI GTCTC 3 cut(s) 70, 647, 667
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 848, 901
BstNI CCWGG 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 659
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 501, 603
BstUI CGCG 3 cut(s) 169, 951, 1089
BstV1I GCAGC 3 cut(s) 433, 541, 982
BstX2I RGATCY 3 cut(s) 73, 682, 1030
BstXI CCANNNNNNTGG 2 cut(s) 817, 940
BstYI RGATCY 3 cut(s) 73, 682, 1030
BstZ17I GTATAC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 821
BtgZI GCGATG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 672
BtuMI TCGCGA 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 1087
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 953
Cfr10I RCCGGY 2 cut(s) 146, 385
Cfr13I GGNCC 1 cut(s) 534
Csp6I GTAC 3 cut(s) 301, 486, 492
CspAI ACCGGT 1 cut(s) 146
CviAII CATG 3 cut(s) 224, 905, 940
CviQI GTAC 3 cut(s) 301, 486, 492
DdeI CTNAG 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 2 cut(s) 578, 721
EarI CTCTTC 2 cut(s) 578, 721
Eco47I GGWCC 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 667
FaeI CATG 3 cut(s) 227, 908, 943
FatI CATG 3 cut(s) 223, 904, 939
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 447, 555, 971
Fsp4HI GCNGC 3 cut(s) 447, 555, 971
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 952
GluI GCNGC 3 cut(s) 447, 555, 971
GsaI CCCAGC 1 cut(s) 346
HaeIII GGCC 1 cut(s) 821
HapII CCGG 2 cut(s) 147, 386
HhaI GCGC 1 cut(s) 953
Hin1II CATG 3 cut(s) 227, 908, 943
Hin6I GCGC 1 cut(s) 951
HinP1I GCGC 1 cut(s) 951
HindIII AAGCTT 2 cut(s) 308, 803
HinfI GANTC 5 cut(s) 269, 518, 655, 776, 1091
HpaII CCGG 2 cut(s) 147, 386
HphI GGTGA 5 cut(s) 161, 462, 516, 570, 880
Hpy166II GTNNAC 2 cut(s) 21, 124
Hpy188I TCNGA 3 cut(s) 400, 538, 592
Hpy188III TCNNGA 7 cut(s) 32, 71, 168, 186, 224, 723, 773
Hpy8I GTNNAC 2 cut(s) 21, 124
HpyCH4III ACNGT 1 cut(s) 1010
HpyCH4IV ACGT 2 cut(s) 322, 792
HpyCH4V TGCA 6 cut(s) 213, 355, 419, 449, 557, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 848, 901
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 322, 792
Hsp92II CATG 3 cut(s) 227, 908, 943
HspAI GCGC 1 cut(s) 951
Ksp22I TGATCA 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 721
LmnI GCTCC 2 cut(s) 892, 943
Lsp1109I GCAGC 3 cut(s) 433, 541, 982
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 322, 792
MaeIII GTNAC 1 cut(s) 788
MbiI CCGCTC 1 cut(s) 79
MboII GAAGA 7 cut(s) 257, 275, 328, 595, 631, 738, 1025
MfeI CAATTG 1 cut(s) 815
MflI RGATCY 3 cut(s) 73, 682, 1030
MluCI AATT 8 cut(s) 198, 348, 571, 625, 701, 815, 846, 915
MlyI GAGTC 1 cut(s) 649
MseI TTAA 2 cut(s) 59, 708
MslI CAYNNNNRTG 1 cut(s) 938
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 147, 386
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 3 cut(s) 169, 951, 1089
MwoI GCNNNNNNNGC 2 cut(s) 848, 901
NlaIII CATG 3 cut(s) 227, 908, 943
NlaIV GGNNCC 2 cut(s) 75, 945
NmuCI GTSAC 1 cut(s) 788
NruI TCGCGA 1 cut(s) 169
PagI TCATGA 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 721
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PfeI GAWTC 4 cut(s) 269, 518, 776, 1091
PinAI ACCGGT 1 cut(s) 146
PkrI GCNGC 3 cut(s) 448, 556, 972
Ple19I CGATCG 1 cut(s) 167
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PshAI GACNNNNGTC 1 cut(s) 659
Psp1406I AACGTT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 75, 945
PspPI GGNCC 1 cut(s) 534
PsuI RGATCY 3 cut(s) 73, 682, 1030
PvuI CGATCG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 698
RgaI GCGATCGC 1 cut(s) 167
RruI TCGCGA 1 cut(s) 169
RsaI GTAC 3 cut(s) 302, 487, 493
RsaNI GTAC 3 cut(s) 301, 486, 492
RseI CAYNNNNRTG 1 cut(s) 938
SapI GCTCTTC 1 cut(s) 721
SaqAI TTAA 2 cut(s) 59, 708
SatI GCNGC 3 cut(s) 447, 555, 971
Sau96I GGNCC 1 cut(s) 534
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 112
SfaAI GCGATCGC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 501, 603
SgfI GCGATCGC 1 cut(s) 167
SinI GGWCC 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 8 cut(s) 198, 348, 571, 625, 701, 815, 846, 915
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 1010
TaiI ACGT 2 cut(s) 325, 795
TaqII GACCGA 1 cut(s) 927
TasI AATT 8 cut(s) 198, 348, 571, 625, 701, 815, 846, 915
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 4 cut(s) 269, 518, 776, 1091
Tru1I TTAA 2 cut(s) 59, 708
Tru9I TTAA 2 cut(s) 59, 708
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 3 cut(s) 446, 554, 970
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 212, 240, 900, 1083
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 2 cut(s) 348, 701
XbaI TCTAGA 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.