RchiOBHm_Chr3g0494851

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000705
Physical Location & Seq
Reverse (-)
43977106 .. 43979223
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45735

Sequence Viewer

Length: 369 bp
ATGTCTATCAAAGGAGCTAATTGGACAAGAAAGGAAGATGAAGCTCTTTGCATTGTGTTCATCCAAGTATCCAAAAACTCCGACAAAGGTACGAGCCAAAAAGAGACCGACATTTGGAAACAAGTGGAGCAAAAGTTTAAAGAATTTTTCAATGGTACTCCTCCGAATGTTAGAAATTTTGAGAGTTGTAAATCTCGATGGCAAAAACACCTCTTCCCACAAATGAACAAATTGCATCAATGCGTCAAATGCGCCGAGAGGAGGATTCATTGCGGAGCTAATCAATCCGACCAACAACACTTTGCCGAAGATTTCTACAAGGACGATATGAATGGAAAAAATTTTCGCCATCAAAGGTGTTACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.55

Weight (kDa)

9.08

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 143, 175, 340
AfaI GTAC 2 cut(s) 91, 157
AfiI CCNNNNNNNGG 2 cut(s) 114, 261
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 3 cut(s) 17, 44, 278
AluI AGCT 3 cut(s) 17, 44, 278
Alw26I GTCTC 1 cut(s) 98
ApoI RAATTY 3 cut(s) 143, 175, 340
AspLEI GCGC 1 cut(s) 254
BccI CCATC 2 cut(s) 192, 357
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 261
Bse3DI GCAATG 1 cut(s) 268
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 114, 261
BseMI GCAATG 1 cut(s) 268
BseRI GAGGAG 2 cut(s) 150, 274
BslI CCNNNNNNNGG 2 cut(s) 114, 261
BsmAI GTCTC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 98
BspACI CCGC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 218
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 254
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 249
BsuI GTATCC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 60
CfoI GCGC 1 cut(s) 254
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 90, 156
CviJI RGCY 4 cut(s) 17, 44, 96, 278
CviKI_1 RGCY 4 cut(s) 17, 44, 96, 278
CviQI GTAC 2 cut(s) 90, 156
DraI TTTAAA 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco31I GGTCTC 1 cut(s) 98
FaiI YATR 1 cut(s) 329
FokI GGATG 1 cut(s) 47
GlaI GCGC 1 cut(s) 253
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 82, 165, 289
Hpy188III TCNNGA 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 51, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HspAI GCGC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 14, 127, 275
LweI GCATC 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 359
MboII GAAGA 3 cut(s) 47, 205, 320
MluCI AATT 6 cut(s) 19, 143, 175, 230, 340, 364
MmeI TCCRAC 2 cut(s) 105, 312
MnlI CCTC 4 cut(s) 171, 221, 252, 255
MseI TTAA 2 cut(s) 138, 367
MwoI GCNNNNNNNGC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 280
PfeI GAWTC 1 cut(s) 265
RsaI GTAC 2 cut(s) 91, 157
RsaNI GTAC 2 cut(s) 90, 156
SaqAI TTAA 2 cut(s) 138, 367
SetI ASST 6 cut(s) 19, 46, 91, 213, 280, 359
SfaNI GCATC 1 cut(s) 244
SgeI CNNG 7 cut(s) 39, 77, 105, 134, 207, 268, 331
Sse9I AATT 6 cut(s) 19, 143, 175, 230, 340, 364
SsiI CCGC 1 cut(s) 273
TaqI TCGA 1 cut(s) 196
TaqII GACCGA 1 cut(s) 122
TasI AATT 6 cut(s) 19, 143, 175, 230, 340, 364
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 2 cut(s) 138, 367
Tru9I TTAA 2 cut(s) 138, 367
TspDTI ATGAA 5 cut(s) 49, 54, 239, 257, 344
XapI RAATTY 3 cut(s) 143, 175, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.