Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0000705

Physical Location & Seq

Genomic Coordinates Forward (+)

41402 .. 42263

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgccaaaggaagatgaagctcttactattgcttatatcaaagtctcggaagatatggagaagggtaccaaccaatcaaaggaagggctttggtcacaaatccaacaaacatacttggagtattatgaaggcaccaaacttccgaaggcaagatcggaagagagttgtaattctcgatggaaaaaacatatatttccaaacatgaacaaatggcaccaatgtctcaagcgttccgaaaggagggatcaaagcggagctaatctccaagatatacaacggcaagccgagagtttctatggggacaactccggaggacaaccatttaagtttggtaattgttataatttgtgcaaagattgggtgacgtttcaagatccacctcaaaaacaatttggtccaacaccggttcaacgaaacacctcaatttctttggaggaggatgagaatcccattgaggattctcctacttcatctcaaacgcaaattcctaggcctatgggaagaaattccgcaagaaaaacaaggcaaaagggcaaagaggcggaagtcaaagccattggagaagaaatggttgccggaatgagagaaatggcggcacaaatgaaagaggcggaagaggaaaggaagagaagagagaagaaaagggaggatcgaagagaggttgctaggttagaggctattttaatgatgcaaaccattgattttactccaaggagtaaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

241

Amino Acids

28.08

Weight (kDa)

8.24

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica	MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica	Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis	pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis	RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata	RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora	Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii	Rroxscaffold_1G00024040
rosa_samantha	Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana	Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
Acc65I	GGTACC	1 cut(s)	65
AccB1I	GGYRCC	3 cut(s)	65, 131, 213
AccIII	TCCGGA	1 cut(s)	308
AciI	CCGC	5 cut(s)	252, 510, 542, 593, 611
AclWI	GGATC	3 cut(s)	252, 368, 657
AcsI	RAATTY	2 cut(s)	483, 505
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	79, 240
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	371, 410
AluBI	AGCT	2 cut(s)	20, 257
AluI	AGCT	2 cut(s)	20, 257
Alw26I	GTCTC	2 cut(s)	49, 227
AlwI	GGATC	3 cut(s)	252, 368, 657
Aor13HI	TCCGGA	1 cut(s)	308
AoxI	GGCC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	483, 505
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	505
Asp718I	GGTACC	1 cut(s)	65
AspA2I	CCTAGG	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	395
AvrII	CCTAGG	1 cut(s)	488
BanI	GGYRCC	3 cut(s)	65, 131, 213
BccI	CCATC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	49, 227
BfaI	CTAG	2 cut(s)	489, 666
BisI	GCNGC	1 cut(s)	594
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	595
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	3 cut(s)	67, 133, 215
BmsI	GCATC	1 cut(s)	678
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
BpuEI	CTTGAG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	488, 710
BsaWI	WCCGGW	2 cut(s)	308, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 240
Bse118I	RCCGGY	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	488, 710
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	79, 240
BseRI	GAGGAG	1 cut(s)	449
BshFI	GGCC	1 cut(s)	493
BshNI	GGYRCC	3 cut(s)	65, 131, 213
BshTI	ACCGGT	1 cut(s)	403
BsiSI	CCGG	3 cut(s)	309, 404, 576
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	79, 240
BsmAI	GTCTC	2 cut(s)	49, 227
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	493
Bsp13I	TCCGGA	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	152, 244, 373, 649
BspACI	CCGC	5 cut(s)	252, 510, 542, 593, 611
BspANI	GGCC	1 cut(s)	493
BspEI	TCCGGA	1 cut(s)	308
BspLI	GGNNCC	3 cut(s)	67, 133, 215
BspPI	GGATC	3 cut(s)	252, 368, 657
BspT107I	GGYRCC	3 cut(s)	65, 131, 213
BsrFI	RCCGGY	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	488, 710
BssMI	GATC	4 cut(s)	152, 244, 373, 649
BssT1I	CCWWGG	2 cut(s)	488, 710
Bst6I	CTCTTC	5 cut(s)	153, 609, 620, 625, 649
BstC8I	GCNNGC	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	4 cut(s)	155, 247, 376, 652
BstMAI	GTCTC	2 cut(s)	49, 227
BstMBI	GATC	4 cut(s)	152, 244, 373, 649
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	493
BtsCI	GGATG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	66
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	20, 88, 257, 284, 493, 554, 677
CviKI_1	RGCY	7 cut(s)	20, 88, 257, 284, 493, 554, 677
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	4 cut(s)	154, 246, 375, 651
DpnII	GATC	4 cut(s)	152, 244, 373, 649
Eam1104I	CTCTTC	5 cut(s)	153, 609, 620, 625, 649
EarI	CTCTTC	5 cut(s)	153, 609, 620, 625, 649
EciI	GGCGGA	2 cut(s)	557, 626
Eco130I	CCWWGG	2 cut(s)	488, 710
Eco147I	AGGCCT	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	488, 710
ErhI	CCWWGG	2 cut(s)	488, 710
FaeI	CATG	1 cut(s)	205
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	2 cut(s)	489, 666
GluI	GCNGC	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	3 cut(s)	309, 404, 576
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	2 cut(s)	445, 458
HpaII	CCGG	3 cut(s)	309, 404, 576
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	49, 144, 157, 235
Hpy188III	TCNNGA	3 cut(s)	174, 309, 371
HpyAV	CCTTC	4 cut(s)	55, 77, 122, 139
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	2 cut(s)	351, 691
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	1 cut(s)	205
Kpn2I	TCCGGA	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	152, 244, 373, 649
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	3 cut(s)	322, 417, 589
LweI	GCATC	1 cut(s)	678
MaeI	CTAG	2 cut(s)	489, 666
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	93, 361
MalI	GATC	4 cut(s)	154, 246, 375, 651
MboI	GATC	4 cut(s)	152, 244, 373, 649
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	7 cut(s)	169, 334, 343, 389, 423, 483, 505
MmeI	TCCRAC	2 cut(s)	127, 422
MroI	TCCGGA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	505
MseI	TTAA	2 cut(s)	324, 683
MspI	CCGG	3 cut(s)	309, 404, 576
NdeII	GATC	4 cut(s)	152, 244, 373, 649
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	3 cut(s)	67, 133, 215
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	93, 361
PceI	AGGCCT	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	2 cut(s)	445, 458
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	595
PsiI	TTATAA	1 cut(s)	342
PspN4I	GGNNCC	3 cut(s)	67, 133, 215
PspPI	GGNCC	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	324, 683
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	4 cut(s)	152, 244, 373, 649
Sau96I	GGNCC	1 cut(s)	395
SetI	ASST	7 cut(s)	22, 259, 368, 382, 422, 663, 671
SfaNI	GCATC	1 cut(s)	678
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	7 cut(s)	169, 334, 343, 389, 423, 483, 505
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	5 cut(s)	252, 510, 542, 593, 611
SspMI	CTAG	2 cut(s)	489, 666
StuI	AGGCCT	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	488, 710
TaiI	ACGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	175, 652
TasI	AATT	7 cut(s)	169, 334, 343, 389, 423, 483, 505
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	445, 458
Tru1I	TTAA	2 cut(s)	324, 683
Tru9I	TTAA	2 cut(s)	324, 683
TseFI	GTSAC	2 cut(s)	93, 361
Tsp45I	GTSAC	2 cut(s)	93, 361
TspDTI	ATGAA	5 cut(s)	30, 141, 218, 459, 617
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	2 cut(s)	483, 505
XmaJI	CCTAGG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	505
XspI	CTAG	2 cut(s)	489, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.