RchiOBHm_Chr2g0111501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000705
Physical Location & Seq
Reverse (-)
23142495 .. 23143166
672 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48509

Sequence Viewer

Length: 279 bp
ATGGTGGCACACCTAAATCAACTAAGAGAAGATCTCCAGAAATCAAAGGAGGAAAGAGCAAGAAGAGATCGACTCAAGGAAGAGAGAAGAGAGCGTGATAGGGAAGAAGCTATTTTAGCAATGCAAACCATCAATTTTACTCCTTTGAGTAAAGAGTATTATGACGGAAAGAAAAGGGAGATAATGGAGAAAATTCGGCGCCGTGAGTTGTTTCCGTCATCTGGTTCGACGTCGAATGAGTACCGCCCTGAAATGTCATTCAATGACTCGGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

11.2

Weight (kDa)

6.64

Isoelectric Point (pI)

71.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 198
AciI CCGC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 192
AcyI GRCGYC 2 cut(s) 199, 230
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 1 cut(s) 201
BanI GGYRCC 1 cut(s) 198
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 202
BglII AGATCT 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 200
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 57, 89
BpmI CTGGAG 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 2 cut(s) 199, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 126
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 221
Bsp143I GATC 2 cut(s) 31, 67
BspACI CCGC 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 126
BssMI GATC 2 cut(s) 31, 67
BssNI GRCGYC 2 cut(s) 199, 230
Bst6I CTCTTC 3 cut(s) 58, 75, 82
BstACI GRCGYC 2 cut(s) 199, 230
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 34, 70
BstMBI GATC 2 cut(s) 31, 67
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BtsCI GGATG 1 cut(s) 277
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 1 cut(s) 110
CviKI_1 RGCY 1 cut(s) 110
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 23
DinI GGCGCC 1 cut(s) 200
DpnI GATC 2 cut(s) 33, 69
DpnII GATC 2 cut(s) 31, 67
Eam1104I CTCTTC 3 cut(s) 58, 75, 82
EarI CTCTTC 3 cut(s) 58, 75, 82
EgeI GGCGCC 1 cut(s) 200
EheI GGCGCC 1 cut(s) 200
FaiI YATR 1 cut(s) 162
GlaI GCGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 20
HaeII RGCGCY 1 cut(s) 202
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 2 cut(s) 199, 230
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 2 cut(s) 72, 266
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 232, 235
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 2 cut(s) 199, 230
HspAI GCGC 1 cut(s) 199
KasI GGCGCC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 31, 67
LpnPI CCDG 3 cut(s) 50, 207, 261
MaeII ACGT 1 cut(s) 230
MalI GATC 2 cut(s) 33, 69
MboI GATC 2 cut(s) 31, 67
MboII GAAGA 5 cut(s) 41, 75, 92, 99, 116
MflI RGATCY 1 cut(s) 31
MluCI AATT 2 cut(s) 133, 192
Mly113I GGCGCC 1 cut(s) 199
MlyI GAGTC 2 cut(s) 66, 260
MnlI CCTC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 116
NarI GGCGCC 1 cut(s) 199
NdeII GATC 2 cut(s) 31, 67
NlaIV GGNNCC 1 cut(s) 200
PleI GAGTC 2 cut(s) 66, 260
PluTI GGCGCC 1 cut(s) 202
PpsI GAGTC 2 cut(s) 66, 260
PspN4I GGNNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 31, 67
SchI GAGTC 2 cut(s) 66, 260
SetI ASST 3 cut(s) 15, 112, 233
SfoI GGCGCC 1 cut(s) 200
SgeI CNNG 7 cut(s) 49, 72, 88, 107, 215, 234, 260
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 133, 192
SsiI CCGC 1 cut(s) 244
SspDI GGCGCC 1 cut(s) 198
TaiI ACGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 70, 227, 233
TasI AATT 2 cut(s) 133, 192
TspGWI ACGGA 2 cut(s) 180, 204
XapI RAATTY 1 cut(s) 192
ZraI GACGTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.