FvH4_7g17721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000705
Physical Location & Seq
Forward (+)
14975560 .. 14976141
582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17721.t1

Sequence Viewer

Length: 582 bp
ATGGGTGGAAAAATTTCTCGCCATCATAGTTGTTACAATTTGTGTTGTGATACTTGGGTCACGTTTGATGATCCACCACAAGAAAACTTTGGTCCACCACCGGTTCAAAGAAACTTCCCTATTTCCGTAGATGATGATGAAGATGATGATGCAAATGGATCTACTCCACCATCAACTTCGATTCCGGAACCCCTTCCTATGCCAATGGGTCGAAATACCGCAAGAAGAAAGCAATTGAAAGCCAAAGAAAAGGAGGAGAAAACCTTTCAAGAAAAATTGTTGGCTAACATAGAGCGGATGAGAGAAGAAAACATCAAGGCGGAAGAGGCAAAAACATTGAGAGAGAAAATGAAGGAAGAACGACGAGAAAGGGATAGGAATGAAGCCATTTTAATGATGCAAATCACGGATTATTCTCCAAGGAGTAAGAAATACTTTGATGATAGGAAGAGGGACGCTCTTGAAAGTTTAAGTGCACGGGAGTTGTTTTCTAATTCCTCCACAACATCCAATGACTATCATCCACATATGGGAACTGAAGATGCATATCATCCACATATGGCATCCGAAGACGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.42

Weight (kDa)

5.19

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 46 - 150 4.5e-06 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 295
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 3 cut(s) 219, 295, 320
AclWI GGATC 2 cut(s) 65, 166
AcsI RAATTY 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 558
AfiI CCNNNNNNNGG 1 cut(s) 530
AgeI ACCGGT 1 cut(s) 100
AgsI TTSAA 4 cut(s) 107, 238, 269, 464
Alw21I GWGCWC 1 cut(s) 478
Alw44I GTGCAC 1 cut(s) 474
AlwI GGATC 2 cut(s) 65, 166
Aor13HI TCCGGA 1 cut(s) 184
ApaLI GTGCAC 1 cut(s) 474
ApoI RAATTY 1 cut(s) 12
AsiGI ACCGGT 1 cut(s) 100
Asp700I GAANNNNTTC 2 cut(s) 13, 192
AspS9I GGNCC 1 cut(s) 92
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 478
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BbsI GAAGAC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 478
BccI CCATC 2 cut(s) 30, 178
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 4 cut(s) 139, 387, 532, 572
BpiI GAAGAC 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BsaBI GATNNNNATC 2 cut(s) 401, 546
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 2 cut(s) 100, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse118I RCCGGY 1 cut(s) 100
Bse8I GATNNNNATC 2 cut(s) 401, 546
BseAI TCCGGA 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 5 cut(s) 303, 506, 520, 550, 563
BseJI GATNNNNATC 2 cut(s) 401, 546
BseLI CCNNNNNNNGG 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 478
BshTI ACCGGT 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 2 cut(s) 101, 185
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 530
BsmFI GGGAC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 478
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 70, 158
BspACI CCGC 3 cut(s) 219, 295, 320
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 2 cut(s) 65, 166
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 2 cut(s) 70, 158
BssT1I CCWWGG 1 cut(s) 419
Bst6I CTCTTC 2 cut(s) 318, 443
BstF5I GGATG 5 cut(s) 303, 506, 520, 550, 563
BstKTI GATC 2 cut(s) 73, 161
BstMBI GATC 2 cut(s) 70, 158
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 478
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 5 cut(s) 303, 506, 520, 550, 563
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 464
CspAI ACCGGT 1 cut(s) 100
CviJI RGCY 3 cut(s) 242, 284, 386
CviKI_1 RGCY 3 cut(s) 242, 284, 386
DpnI GATC 2 cut(s) 72, 160
DpnII GATC 2 cut(s) 70, 158
Eam1104I CTCTTC 2 cut(s) 318, 443
EarI CTCTTC 2 cut(s) 318, 443
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 558
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 419
FaiI YATR 8 cut(s) 27, 200, 290, 528, 530, 547, 558, 560
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 467
FauNDI CATATG 2 cut(s) 528, 558
FokI GGATG 5 cut(s) 310, 493, 507, 537, 550
HapII CCGG 2 cut(s) 101, 185
HgaI GACGC 1 cut(s) 464
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 101, 185
Hpy166II GTNNAC 2 cut(s) 95, 476
Hpy188I TCNGA 1 cut(s) 568
Hpy188III TCNNGA 3 cut(s) 185, 269, 461
Hpy8I GTNNAC 2 cut(s) 95, 476
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 2 cut(s) 203, 346
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 4 cut(s) 152, 400, 476, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 70, 158
LpnPI CCDG 2 cut(s) 114, 198
LweI GCATC 4 cut(s) 139, 387, 532, 572
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 32, 58
MalI GATC 2 cut(s) 72, 160
MbiI CCGCTC 1 cut(s) 295
MboI GATC 2 cut(s) 70, 158
MboII GAAGA 8 cut(s) 152, 237, 317, 335, 368, 460, 551, 581
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 5 cut(s) 12, 37, 233, 275, 493
MnlI CCTC 4 cut(s) 247, 319, 444, 508
Mph1103I ATGCAT 1 cut(s) 547
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 2 cut(s) 13, 192
MseI TTAA 2 cut(s) 392, 470
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 2 cut(s) 101, 185
MunI CAATTG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeI CATATG 2 cut(s) 528, 558
NdeII GATC 2 cut(s) 70, 158
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 547
PdmI GAANNNNTTC 2 cut(s) 13, 192
PfeI GAWTC 1 cut(s) 181
PinAI ACCGGT 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 392, 470
Sau3AI GATC 2 cut(s) 70, 158
Sau96I GGNCC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 478
SetI ASST 2 cut(s) 65, 266
SfaNI GCATC 4 cut(s) 139, 387, 532, 572
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 5 cut(s) 12, 37, 233, 275, 493
SsiI CCGC 3 cut(s) 219, 295, 320
StyI CCWWGG 1 cut(s) 419
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 179, 211
TasI AATT 5 cut(s) 12, 37, 233, 275, 493
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 392, 470
Tru9I TTAA 2 cut(s) 392, 470
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 153, 365, 396
TspGWI ACGGA 2 cut(s) 115, 422
VneI GTGCAC 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 12
XmnI GAANNNNTTC 2 cut(s) 13, 192
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.