RLG00000017948

Conserved hypothetical protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
23470177 .. 23470998
822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017948

Sequence Viewer

Length: 627 bp
ATGGAGAATTCTGAAAAGGTGATAAGAGGGAAAGCATTCTCCAGTCCAGAAGACGACGCACTATGCAAGGCATTTTTGTATGTAAGTCAAGATTCTGCTATTGGGACCTGGCAAACAAAGATTGTATTTTGGCAACAAATTCATTCAAAATGGGAAGAATTGTATGTTGCAGACACAGGGCTTGCCCCAATGAGATATCCAGGTAGCCTCCGTTCTCGATTCAAAACTATCAAAACTCAATGTACTAAATATGCTGCAAGAGTGACAGAGACAAAACGAAGACGGATTAGTGGCTTTACTGAAGCCAACATTATGGAACAAGCAAATATAAGCTTCAAAAATAAGGGGAAAACTTTTACTGAAACACAAGAAACACACACTTCACTTGATGGAGATGGAGATGGAGATGGAGATGGAGATGAAGAGCCGCCGGTTAGTATTTCGGCCACTAAACCCAATCAAAGGCCTATTGAGAAAAAGGCTGCAAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCTGATATGGCTGAAGAACTTCGGCGATATAACAACATCATGAAAGCTGAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACGAGTATTTCAAGAGTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

209

Amino Acids

23.67

Weight (kDa)

8.92

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 2 cut(s) 7, 138
AcuI CTGAAG 3 cut(s) 321, 549, 585
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 5 cut(s) 147, 223, 337, 503, 614
AjnI CCWGG 2 cut(s) 107, 199
AluBI AGCT 4 cut(s) 333, 515, 563, 569
AluI AGCT 4 cut(s) 333, 515, 563, 569
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 2 cut(s) 444, 464
ApeKI GCWGC 2 cut(s) 254, 482
ApoI RAATTY 2 cut(s) 7, 138
Asp700I GAANNNNTTC 2 cut(s) 35, 534
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 105
BbsI GAAGAC 2 cut(s) 57, 286
BbvI GCAGC 2 cut(s) 241, 469
BccI CCATC 5 cut(s) 383, 389, 395, 401, 407
BciT130I CCWGG 2 cut(s) 109, 201
BcoDI GTCTC 1 cut(s) 263
BisI GCNGC 3 cut(s) 255, 428, 483
BlsI GCNGC 3 cut(s) 256, 429, 484
Bme1390I CCNGG 2 cut(s) 109, 201
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 109, 201
BpiI GAAGAC 2 cut(s) 57, 286
BpmI CTGGAG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 109, 201
BseLI CCNNNNNNNGG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 241, 469
BshFI GGCC 2 cut(s) 446, 466
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 446, 466
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 446, 466
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 430
Bst2UI CCWGG 2 cut(s) 109, 201
Bst6I CTCTTC 2 cut(s) 417, 498
BstC8I GCNNGC 2 cut(s) 183, 513
BstMAI GTCTC 1 cut(s) 263
BstNI CCWGG 2 cut(s) 109, 201
BstSCI CCNGG 2 cut(s) 107, 199
BstV1I GCAGC 2 cut(s) 241, 469
BstV2I GAAGAC 2 cut(s) 57, 286
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 446, 466
Cac8I GCNNGC 2 cut(s) 183, 513
CciI TCATGA 1 cut(s) 555
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 105
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 243
CviAII CATG 2 cut(s) 556, 624
CviQI GTAC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 2 cut(s) 417, 498
EarI CTCTTC 2 cut(s) 417, 498
Eco147I AGGCCT 1 cut(s) 466
Eco32I GATATC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 3 cut(s) 321, 549, 585
EcoO109I RGGNCCY 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 107, 199
EcoRV GATATC 1 cut(s) 197
FaeI CATG 2 cut(s) 559, 627
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 555, 623
FauNDI CATATG 1 cut(s) 597
Fnu4HI GCNGC 3 cut(s) 255, 428, 483
Fsp4HI GCNGC 3 cut(s) 255, 428, 483
GluI GCNGC 3 cut(s) 255, 428, 483
GsuI CTGGAG 1 cut(s) 25
HaeIII GGCC 2 cut(s) 446, 466
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 559, 627
HindIII AAGCTT 2 cut(s) 331, 513
HinfI GANTC 3 cut(s) 92, 219, 617
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 13, 520
Hpy188III TCNNGA 5 cut(s) 47, 89, 216, 556, 614
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 580
HpyCH4V TGCA 5 cut(s) 66, 170, 257, 485, 623
Hsp92II CATG 2 cut(s) 559, 627
LguI GCTCTTC 1 cut(s) 417
LpnPI CCDG 8 cut(s) 55, 60, 94, 121, 162, 186, 213, 444
Lsp1109I GCAGC 2 cut(s) 241, 469
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 8 cut(s) 62, 167, 291, 434, 505, 515, 542, 589
MluCI AATT 3 cut(s) 7, 138, 158
MlyI GAGTC 1 cut(s) 626
MnlI CCTC 4 cut(s) 20, 218, 483, 499
MroXI GAANNNNTTC 2 cut(s) 35, 534
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 109, 201
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 2 cut(s) 109, 201
NdeI CATATG 1 cut(s) 597
NlaIII CATG 2 cut(s) 559, 627
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 262
PagI TCATGA 1 cut(s) 555
PceI AGGCCT 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 417
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 2 cut(s) 35, 534
PfeI GAWTC 2 cut(s) 92, 219
PkrI GCNGC 3 cut(s) 256, 429, 484
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 107, 199
PspGI CCWGG 2 cut(s) 107, 199
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 105
PspPPI RGGWCCY 1 cut(s) 105
PsrI GAACNNNNNNTAC 2 cut(s) 196, 228
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 417
SatI GCNGC 3 cut(s) 255, 428, 483
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 2 cut(s) 109, 201
SetI ASST 7 cut(s) 21, 110, 205, 335, 517, 565, 571
SinI GGWCC 1 cut(s) 105
Sse9I AATT 3 cut(s) 7, 138, 158
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 1 cut(s) 428
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 107, 199
TaqI TCGA 1 cut(s) 217
TasI AATT 3 cut(s) 7, 138, 158
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 92, 219
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 254, 482
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 131, 435, 572
TspGWI ACGGA 2 cut(s) 200, 298
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 2 cut(s) 7, 138
XmnI GAANNNNTTC 2 cut(s) 35, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.