Rw1G034040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000705
Physical Location & Seq
Forward (+)
61968090 .. 61968989
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034040.1

Sequence Viewer

Length: 723 bp
ATGGAGAAGGGTACCAACCAATTAAAGGAAGGGCTTTGGGCACGAATCCAACAAACATACTTGGAGTATTATGAAGGCACCAAACTTCCGAAGGCAAGATCGGAAGAGAGTTGTAATTCTCGATGGAAAAAACATATATTTCCAAACATGAACAAATGGCACCAATGTCTCAAGCGTTCCGAAATGAGGGATCAAAGCAGAGCTAATCTCCAAGATATACAACGGCAAGCCGAGAGTTTCTATAGGGACGACTCAGGACAACCATTTAAGTTTGGTAATTGTTATAATTTGTGCAAAGATTGGGTGGCATTTCAAGATCCACCTCAAGAACAATTTGGTCCAACACCGGTTCAACGAAACACCTCAATTTCTTTGGTGGAGGATGAGGATCCCATTGAGGATTCTCCTACTTCATCTCAAATGCAAATTCCTAGGCCTATGGGAAGAAATGCCGCAAGAAAAACAAGGCAAAAGGGCAAAGAGGCGGAAGTCAAAGCCATTGGAGAAGAAATGAAGAAAAGGGAGGATCGAAGAGAGGTTGCTAGGTTAGAGGCCATTTTAATGATGAAAACCATTGATTTTACTCCAAGGAGTAAAGAGTATTTTGATGGGAAGAAAAGAGAAGCTCTCCACAAACTCCAAGGATGTGAATTGTTTCCAAATTCCGGCGAGACATCCGATGTCTATCGTCCACAAATGCCATCCGATGAAGATGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

28.11

Weight (kDa)

7.59

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
Acc65I GGTACC 1 cut(s) 11
AccB1I GGYRCC 3 cut(s) 11, 77, 159
AciI CCGC 2 cut(s) 453, 485
AclWI GGATC 5 cut(s) 198, 311, 383, 396, 534
AcsI RAATTY 2 cut(s) 426, 661
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 25, 186, 665
AgeI ACCGGT 1 cut(s) 346
AgsI TTSAA 2 cut(s) 314, 353
AluBI AGCT 3 cut(s) 203, 626, 719
AluI AGCT 3 cut(s) 203, 626, 719
Alw26I GTCTC 2 cut(s) 173, 665
AlwI GGATC 5 cut(s) 198, 311, 383, 396, 534
AoxI GGCC 2 cut(s) 434, 552
ApoI RAATTY 2 cut(s) 426, 661
AsiGI ACCGGT 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 654
Asp718I GGTACC 1 cut(s) 11
AspA2I CCTAGG 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 43
BamHI GGATCC 1 cut(s) 388
BanI GGYRCC 3 cut(s) 11, 77, 159
BccI CCATC 3 cut(s) 117, 602, 709
BceAI ACGGC 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 173, 665
BfaI CTAG 2 cut(s) 432, 543
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 1 cut(s) 453
BlnI CCTAGG 1 cut(s) 431
BlsI GCNGC 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 4 cut(s) 13, 79, 161, 390
BplI GAGNNNNNCTC 4 cut(s) 192, 224, 612, 644
BpuEI CTTGAG 2 cut(s) 155, 309
BsaBI GATNNNNATC 2 cut(s) 387, 684
BsaJI CCNNGG 3 cut(s) 431, 587, 640
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 186, 665
Bse118I RCCGGY 1 cut(s) 346
Bse8I GATNNNNATC 2 cut(s) 387, 684
BseDI CCNNGG 3 cut(s) 431, 587, 640
BseGI GGATG 4 cut(s) 388, 650, 674, 701
BseJI GATNNNNATC 2 cut(s) 387, 684
BseLI CCNNNNNNNGG 3 cut(s) 25, 186, 665
BseMII CTCAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 43
BshFI GGCC 2 cut(s) 436, 554
BshNI GGYRCC 3 cut(s) 11, 77, 159
BshTI ACCGGT 1 cut(s) 346
BsiSI CCGG 2 cut(s) 347, 666
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 3 cut(s) 25, 186, 665
BsmAI GTCTC 2 cut(s) 173, 665
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 436, 554
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 5 cut(s) 98, 190, 316, 388, 526
BspACI CCGC 2 cut(s) 453, 485
BspANI GGCC 2 cut(s) 436, 554
BspCNI CTCAG 1 cut(s) 266
BspLI GGNNCC 4 cut(s) 13, 79, 161, 390
BspPI GGATC 5 cut(s) 198, 311, 383, 396, 534
BspT107I GGYRCC 3 cut(s) 11, 77, 159
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 431, 587, 640
BssMI GATC 5 cut(s) 98, 190, 316, 388, 526
BssT1I CCWWGG 3 cut(s) 431, 587, 640
Bst6I CTCTTC 2 cut(s) 99, 526
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 4 cut(s) 388, 650, 674, 701
BstKTI GATC 5 cut(s) 101, 193, 319, 391, 529
BstMAI GTCTC 2 cut(s) 173, 665
BstMBI GATC 5 cut(s) 98, 190, 316, 388, 526
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 316, 388
BstYI RGATCY 2 cut(s) 316, 388
BsuRI GGCC 2 cut(s) 436, 554
BtsCI GGATG 4 cut(s) 388, 650, 674, 701
Cac8I GCNNGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 12
CspAI ACCGGT 1 cut(s) 346
CviAII CATG 1 cut(s) 148
CviJI RGCY 8 cut(s) 34, 203, 230, 436, 497, 554, 626, 719
CviKI_1 RGCY 8 cut(s) 34, 203, 230, 436, 497, 554, 626, 719
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 253
DpnI GATC 5 cut(s) 100, 192, 318, 390, 528
DpnII GATC 5 cut(s) 98, 190, 316, 388, 526
Eam1104I CTCTTC 2 cut(s) 99, 526
EarI CTCTTC 2 cut(s) 99, 526
EciI GGCGGA 1 cut(s) 500
Eco130I CCWWGG 3 cut(s) 431, 587, 640
Eco147I AGGCCT 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 338
EcoT14I CCWWGG 3 cut(s) 431, 587, 640
ErhI CCWWGG 3 cut(s) 431, 587, 640
FaeI CATG 1 cut(s) 151
FaiI YATR 9 cut(s) 58, 72, 135, 137, 149, 218, 243, 285, 440
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 4 cut(s) 395, 657, 661, 688
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 2 cut(s) 432, 543
GluI GCNGC 1 cut(s) 453
HaeIII GGCC 2 cut(s) 436, 554
HapII CCGG 2 cut(s) 347, 666
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 3 cut(s) 45, 251, 401
HpaII CCGG 2 cut(s) 347, 666
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 5 cut(s) 90, 103, 181, 679, 706
Hpy188III TCNNGA 4 cut(s) 120, 255, 314, 326
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 23, 68, 85
HpyCH4V TGCA 2 cut(s) 294, 424
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 1 cut(s) 151
KpnI GGTACC 1 cut(s) 15
Kzo9I GATC 5 cut(s) 98, 190, 316, 388, 526
LpnPI CCDG 3 cut(s) 240, 360, 679
MaeI CTAG 2 cut(s) 432, 543
MalI GATC 5 cut(s) 100, 192, 318, 390, 528
MboI GATC 5 cut(s) 98, 190, 316, 388, 526
MboII GAAGA 7 cut(s) 116, 456, 518, 526, 543, 625, 722
MflI RGATCY 2 cut(s) 316, 388
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 9 cut(s) 20, 115, 277, 286, 332, 366, 426, 650, 661
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 73, 365
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 4 cut(s) 23, 267, 560, 721
MslI CAYNNNNRTG 1 cut(s) 560
MspI CCGG 2 cut(s) 347, 666
NdeII GATC 5 cut(s) 98, 190, 316, 388, 526
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 4 cut(s) 13, 79, 161, 390
NmeAIII GCCGAG 1 cut(s) 256
PceI AGGCCT 1 cut(s) 436
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 2 cut(s) 45, 401
PinAI ACCGGT 1 cut(s) 346
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PsiI TTATAA 1 cut(s) 285
PspN4I GGNNCC 4 cut(s) 13, 79, 161, 390
PspPI GGNCC 1 cut(s) 338
PsuI RGATCY 2 cut(s) 316, 388
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 560
SaqAI TTAA 4 cut(s) 23, 267, 560, 721
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 5 cut(s) 98, 190, 316, 388, 526
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 43
SetI ASST 7 cut(s) 205, 325, 365, 540, 548, 628, 721
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 2 cut(s) 170, 324
SmoI CTYRAG 2 cut(s) 170, 324
Sse9I AATT 9 cut(s) 20, 115, 277, 286, 332, 366, 426, 650, 661
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 2 cut(s) 453, 485
SspMI CTAG 2 cut(s) 432, 543
StuI AGGCCT 1 cut(s) 436
StyI CCWWGG 3 cut(s) 431, 587, 640
TaqI TCGA 2 cut(s) 121, 529
TasI AATT 9 cut(s) 20, 115, 277, 286, 332, 366, 426, 650, 661
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 2 cut(s) 45, 401
Tru1I TTAA 4 cut(s) 23, 267, 560, 721
Tru9I TTAA 4 cut(s) 23, 267, 560, 721
TspDTI ATGAA 6 cut(s) 87, 164, 402, 527, 581, 723
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 2 cut(s) 426, 661
XmaJI CCTAGG 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 432, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.