Rmu_sc0011648.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011648.1
OG0000705
Physical Location & Seq
Forward (+)
5477 .. 6305
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011648.1_g000001.1.cds

Sequence Viewer

Length: 576 bp
atgccaaaagaagatgaagctcttactattgcttatatcaaagtctcggaagatatggagaagggtaccaaccaatcaaaggaagggctttggtcacgaatccaacaaacatacttggagtattatgaaggcaccaaacttccgaaggcgagatcggaagatagttccgagagtttctatggggacgactccggaggacaaccatttaagtttggtaattgttataatttgtgcaaagattgggtgacgtttcaagatccacctcaagaacaatttggtccaacaccggttcaacgaaacacctcaatttctttggagaaggatgagaatcccattgaggattctcctacttcatctcaaacgcaaattcctaggcctatgggaagaaattccgcaagaaaaacaaggcaaaagggcaaagaggcggaagtcaaagccattggagaagaaatggttgccggaatgagagaaatggcggcacaaatgaaagaggcggaagaggaaaggaagagaagagagaagaaaagggaggatcgaagagaggttgctaggttagaggctattttaatgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.99

Weight (kDa)

5.27

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc65I GGTACC 1 cut(s) 65
AccB1I GGYRCC 2 cut(s) 65, 131
AccIII TCCGGA 1 cut(s) 191
AciI CCGC 4 cut(s) 393, 425, 476, 494
AclWI GGATC 2 cut(s) 251, 540
AcsI RAATTY 2 cut(s) 366, 388
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 2 cut(s) 254, 293
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 251, 540
Aor13HI TCCGGA 1 cut(s) 191
AoxI GGCC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 366, 388
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 388
Asp718I GGTACC 1 cut(s) 65
AspA2I CCTAGG 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 278
AvrII CCTAGG 1 cut(s) 371
BanI GGYRCC 2 cut(s) 65, 131
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 2 cut(s) 372, 549
BisI GCNGC 1 cut(s) 477
BlnI CCTAGG 1 cut(s) 371
BlsI GCNGC 1 cut(s) 478
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 67, 133
BpuEI CTTGAG 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 2 cut(s) 191, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 327
BseAI TCCGGA 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 79
BshFI GGCC 1 cut(s) 376
BshNI GGYRCC 2 cut(s) 65, 131
BshTI ACCGGT 1 cut(s) 286
BsiSI CCGG 3 cut(s) 192, 287, 459
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 376
Bsp13I TCCGGA 1 cut(s) 191
Bsp143I GATC 3 cut(s) 152, 256, 532
BspACI CCGC 4 cut(s) 393, 425, 476, 494
BspANI GGCC 1 cut(s) 376
BspEI TCCGGA 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 67, 133
BspPI GGATC 2 cut(s) 251, 540
BspT107I GGYRCC 2 cut(s) 65, 131
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 3 cut(s) 152, 256, 532
BssT1I CCWWGG 1 cut(s) 371
Bst6I CTCTTC 4 cut(s) 492, 503, 508, 532
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 3 cut(s) 155, 259, 535
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 3 cut(s) 152, 256, 532
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 66
CspAI ACCGGT 1 cut(s) 286
CviJI RGCY 5 cut(s) 20, 88, 376, 437, 560
CviKI_1 RGCY 5 cut(s) 20, 88, 376, 437, 560
CviQI GTAC 1 cut(s) 66
DpnI GATC 3 cut(s) 154, 258, 534
DpnII GATC 3 cut(s) 152, 256, 532
Eam1104I CTCTTC 4 cut(s) 492, 503, 508, 532
EarI CTCTTC 4 cut(s) 492, 503, 508, 532
EciI GGCGGA 2 cut(s) 440, 509
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
FaiI YATR 7 cut(s) 36, 56, 112, 126, 180, 225, 380
FaqI GGGAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 2 cut(s) 372, 549
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 1 cut(s) 376
HapII CCGG 3 cut(s) 192, 287, 459
HinfI GANTC 4 cut(s) 99, 188, 328, 341
HpaII CCGG 3 cut(s) 192, 287, 459
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 49, 144, 157, 169
Hpy188III TCNNGA 4 cut(s) 96, 192, 254, 266
HpyAV CCTTC 5 cut(s) 55, 77, 122, 139, 313
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 248
Kpn2I TCCGGA 1 cut(s) 191
KpnI GGTACC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 152, 256, 532
LpnPI CCDG 3 cut(s) 205, 300, 472
MaeI CTAG 2 cut(s) 372, 549
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 93, 244
MalI GATC 3 cut(s) 154, 258, 534
MboI GATC 3 cut(s) 152, 256, 532
MflI RGATCY 1 cut(s) 256
MluCI AATT 6 cut(s) 217, 226, 272, 306, 366, 388
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 127, 305
MroI TCCGGA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 388
MseI TTAA 2 cut(s) 207, 566
MspI CCGG 3 cut(s) 192, 287, 459
NdeII GATC 3 cut(s) 152, 256, 532
NlaIV GGNNCC 2 cut(s) 67, 133
NmuCI GTSAC 2 cut(s) 93, 244
PceI AGGCCT 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 99, 328, 341
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 67, 133
PspPI GGNCC 1 cut(s) 278
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 207, 566
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 3 cut(s) 152, 256, 532
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 182
SetI ASST 6 cut(s) 22, 251, 265, 305, 546, 554
SinI GGWCC 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 6 cut(s) 217, 226, 272, 306, 366, 388
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 4 cut(s) 393, 425, 476, 494
SspMI CTAG 2 cut(s) 372, 549
StuI AGGCCT 1 cut(s) 376
StyI CCWWGG 1 cut(s) 371
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 535
TasI AATT 6 cut(s) 217, 226, 272, 306, 366, 388
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 3 cut(s) 99, 328, 341
Tru1I TTAA 2 cut(s) 207, 566
Tru9I TTAA 2 cut(s) 207, 566
TseFI GTSAC 2 cut(s) 93, 244
Tsp45I GTSAC 2 cut(s) 93, 244
TspDTI ATGAA 4 cut(s) 30, 141, 342, 500
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 366, 388
XmaJI CCTAGG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 2 cut(s) 372, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.