Rh1CG033000

regulation of endocannabinoid signaling pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000705
Physical Location & Seq
Reverse (-)
6332500 .. 6333724
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG033000.1

Sequence Viewer

Length: 936 bp
ATGGAGAATTCTGAAAAGTCAATAAGAGGGAAAGCATTCTCCGGTCCAGAAGACGACGCACTATGCAAGGCATTTTTGTATGTAAGTCAAGATTCTGCTATTGGGACCGGGCAAACAAAGATTGTATTTTGGCGACGAATTCATGCAAAATGGGAAGAATTGTATGTTGTAGAAACAGGGCTTGACCCAAAGAGAAATCCAGGTAGCCTCCGTGCTCGATTCAAAACTATCAAAACTCAATGTACTAAATATGCTGCAAGAGTGACAGAAACAAAACGAAGACGAATTAACGGTTTTACTGAAGCTGACATTATGGAACAAGCAAATATAAGCTTCAAAAATAAGGAGAAAATTGTGTTTGCTTATCATCATTGTTGGAGATATTTGAAAGATGCTATTACATGGAAAATTCCCGGGGGAACCAACAGCAACTCAAACAACGGTAATTCATCGTCGCATTTTACCGAAACACAAGAAACACACATTTCACTTGATGGAGATGGAGATAGAGATGAAGAGCCGCCGGTTAGTATTCCGGCCACTAACCCAAATCAAAGGCCCATTGGGAAAAAGGCTGCGAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCTGATATGACTCAAGAACTTCGGCGATATAACAACATCATGGAAGCTGAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACGAGTATTTCAAGAGTCCGCACGACGGGAAGAAGAAAAGGCAGATTTGGAGTATTTGAAAATAGATACCACCTATATGCCTCCAGAACAGAGAGAATTCTTCGAGCAGAAGAAAACTAAGATTTATAATAAAATGAGATTCCGTGGCTCCGATTCCTCAAGCTCCGGTAACCCATCGGTAACCTCAGACTTCGATACGTCATCGGACTATCATGTTGATCCGAATCCTGGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.77

Weight (kDa)

8.87

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 120 - 273 1.9e-15 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AciI CCGC 2 cut(s) 521, 714
AclWI GGATC 1 cut(s) 908
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 4 cut(s) 7, 138, 408, 791
AcuI CTGAAG 2 cut(s) 321, 678
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 720, 923
AgsI TTSAA 6 cut(s) 223, 337, 388, 596, 707, 754
AjnI CCWGG 2 cut(s) 199, 922
AluBI AGCT 6 cut(s) 305, 333, 608, 656, 662, 858
AluI AGCT 6 cut(s) 305, 333, 608, 656, 662, 858
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 2 cut(s) 537, 557
ApeKI GCWGC 2 cut(s) 254, 575
ApoI RAATTY 4 cut(s) 7, 138, 408, 791
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 44, 105, 558, 926
AsuC2I CCSGG 3 cut(s) 109, 414, 415
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 3 cut(s) 44, 105, 926
BbsI GAAGAC 2 cut(s) 57, 286
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 241, 562
BccI CCATC 3 cut(s) 488, 494, 877
BciT130I CCWGG 2 cut(s) 201, 924
BcnI CCSGG 3 cut(s) 109, 414, 415
BisI GCNGC 3 cut(s) 255, 521, 576
BlsI GCNGC 3 cut(s) 256, 522, 577
Bme1390I CCNGG 5 cut(s) 109, 201, 414, 415, 924
Bme18I GGWCC 3 cut(s) 44, 105, 926
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 4 cut(s) 44, 105, 558, 926
BmiI GGNNCC 3 cut(s) 106, 421, 844
BmrFI CCNGG 5 cut(s) 109, 201, 414, 415, 924
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 57, 286
BpmI CTGGAG 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 606, 838
BpuMI CCSGG 3 cut(s) 109, 414, 415
BsaBI GATNNNNATC 1 cut(s) 918
BsaJI CCNNGG 3 cut(s) 413, 414, 838
BsaWI WCCGGW 2 cut(s) 41, 860
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 923
Bse118I RCCGGY 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 2 cut(s) 201, 924
BseDI CCNNGG 3 cut(s) 413, 414, 838
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 2 cut(s) 720, 923
BseMII CTCAG 1 cut(s) 894
BseXI GCAGC 2 cut(s) 241, 562
BshFI GGCC 2 cut(s) 539, 559
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 6 cut(s) 42, 108, 414, 524, 536, 861
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 720, 923
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 539, 559
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 913
BspACI CCGC 2 cut(s) 521, 714
BspANI GGCC 2 cut(s) 539, 559
BspCNI CTCAG 1 cut(s) 893
BspLI GGNNCC 3 cut(s) 106, 421, 844
BspPI GGATC 1 cut(s) 908
BspQI GCTCTTC 1 cut(s) 510
BsrFI RCCGGY 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 413, 414, 838
BssMI GATC 1 cut(s) 913
Bst2UI CCWGG 2 cut(s) 201, 924
Bst4CI ACNGT 2 cut(s) 293, 443
Bst6I CTCTTC 3 cut(s) 510, 575, 591
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 2 cut(s) 813, 880
BstDSI CCRYGG 1 cut(s) 838
BstEII GGTNACC 2 cut(s) 863, 874
BstKTI GATC 1 cut(s) 916
BstMBI GATC 1 cut(s) 913
BstNI CCWGG 2 cut(s) 201, 924
BstPI GGTNACC 2 cut(s) 863, 874
BstSCI CCNGG 5 cut(s) 107, 199, 412, 413, 922
BstV1I GCAGC 2 cut(s) 241, 562
BstV2I GAAGAC 2 cut(s) 57, 286
BsuRI GGCC 2 cut(s) 539, 559
BtgI CCRYGG 1 cut(s) 838
Cac8I GCNNGC 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 4 cut(s) 44, 105, 558, 926
Cfr9I CCCGGG 1 cut(s) 413
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 243
CviAII CATG 4 cut(s) 143, 402, 649, 908
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 813, 880
DpnI GATC 1 cut(s) 915
DpnII GATC 1 cut(s) 913
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 3 cut(s) 510, 575, 591
EarI CTCTTC 3 cut(s) 510, 575, 591
Eco47I GGWCC 3 cut(s) 44, 105, 926
Eco57I CTGAAG 2 cut(s) 321, 678
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 2 cut(s) 863, 874
EcoO65I GGTNACC 2 cut(s) 863, 874
EcoRI GAATTC 3 cut(s) 7, 138, 791
EcoRII CCWGG 2 cut(s) 199, 922
FaeI CATG 4 cut(s) 146, 405, 652, 911
FaqI GGGAC 1 cut(s) 118
FatI CATG 4 cut(s) 142, 401, 648, 907
FauNDI CATATG 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 255, 521, 576
Fsp4HI GCNGC 3 cut(s) 255, 521, 576
GluI GCNGC 3 cut(s) 255, 521, 576
GsuI CTGGAG 1 cut(s) 762
HaeIII GGCC 2 cut(s) 539, 559
HapII CCGG 6 cut(s) 42, 108, 414, 524, 536, 861
HgaI GACGC 1 cut(s) 65
Hin1II CATG 4 cut(s) 146, 405, 652, 911
HindIII AAGCTT 2 cut(s) 331, 606
HinfI GANTC 7 cut(s) 92, 219, 619, 710, 834, 848, 919
HpaII CCGG 6 cut(s) 42, 108, 414, 524, 536, 861
Hpy188I TCNGA 6 cut(s) 13, 613, 847, 883, 901, 918
Hpy188III TCNNGA 5 cut(s) 47, 89, 623, 707, 779
Hpy99I CGWCG 4 cut(s) 59, 138, 457, 723
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 2 cut(s) 293, 443
HpyCH4IV ACGT 1 cut(s) 893
HpyCH4V TGCA 3 cut(s) 66, 146, 257
HpyF3I CTNAG 2 cut(s) 813, 880
HpySE526I ACGT 1 cut(s) 893
Hsp92II CATG 4 cut(s) 146, 405, 652, 911
Kzo9I GATC 1 cut(s) 913
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 2 cut(s) 848, 863
Lsp1109I GCAGC 2 cut(s) 241, 562
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 893
MaeIII GTNAC 3 cut(s) 262, 863, 874
MalI GATC 1 cut(s) 915
MboI GATC 1 cut(s) 913
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 8 cut(s) 7, 138, 158, 285, 351, 408, 445, 791
MlyI GAGTC 2 cut(s) 613, 719
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 7 cut(s) 20, 218, 576, 592, 786, 862, 889
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 6 cut(s) 42, 108, 414, 524, 536, 861
MspR9I CCNGG 5 cut(s) 109, 201, 414, 415, 924
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 2 cut(s) 201, 924
NciI CCSGG 3 cut(s) 109, 414, 415
NdeI CATATG 1 cut(s) 690
NdeII GATC 1 cut(s) 913
NlaIII CATG 4 cut(s) 146, 405, 652, 911
NlaIV GGNNCC 3 cut(s) 106, 421, 844
NmuCI GTSAC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 510
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 5 cut(s) 92, 219, 834, 848, 919
PkrI GCNGC 3 cut(s) 256, 522, 577
PleI GAGTC 2 cut(s) 613, 718
PpsI GAGTC 2 cut(s) 613, 718
PsiI TTATAA 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 199, 922
PspEI GGTNACC 2 cut(s) 863, 874
PspGI CCWGG 2 cut(s) 199, 922
PspN4I GGNNCC 3 cut(s) 106, 421, 844
PspPI GGNCC 4 cut(s) 44, 105, 558, 926
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 255, 521, 576
Sau3AI GATC 1 cut(s) 913
Sau96I GGNCC 4 cut(s) 44, 105, 558, 926
SchI GAGTC 2 cut(s) 613, 719
ScrFI CCNGG 5 cut(s) 109, 201, 414, 415, 924
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 3 cut(s) 44, 105, 926
SmaI CCCGGG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 621, 853
SmoI CTYRAG 2 cut(s) 621, 853
Sse9I AATT 8 cut(s) 7, 138, 158, 285, 351, 408, 445, 791
SsiI CCGC 2 cut(s) 521, 714
StyD4I CCNGG 5 cut(s) 107, 199, 412, 413, 922
TaaI ACNGT 2 cut(s) 293, 443
TaiI ACGT 1 cut(s) 896
TaqI TCGA 3 cut(s) 217, 798, 888
TasI AATT 8 cut(s) 7, 138, 158, 285, 351, 408, 445, 791
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 523
TfiI GAWTC 5 cut(s) 92, 219, 834, 848, 919
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 254, 575
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 131, 438, 528
TspGWI ACGGA 2 cut(s) 200, 827
TspMI CCCGGG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 44, 105, 926
XapI RAATTY 4 cut(s) 7, 138, 408, 791
XmaI CCCGGG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.