pycom16g25710

regulation of auxin polar transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000705
Physical Location & Seq
Reverse (-)
27852977 .. 27853781
805 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25710.2

Sequence Viewer

Length: 414 bp
ATGAAAGATAGGGATTGGACCCGGAAAGAAGATGAAGCTCTTTGCAGGGCTTATAGATGGGTCTCAAAAGATAGTTTGAAGGGGAGTTCACAAACAAGTGAAGGTGTTTGGACTCGTGGGTGTTATTTGAAGATCCACCTCAAGAAATATTTGGTCCTATGCCAAGTGTTCGGAAATGTTTCTTCAAATACAGTTGGGGATGAACATGGATCTCCTACCATTCAAGAAACAAGGGTAGAAAATCCGTCTCCGGGTGAAGCTTCCATACCTAGGGCTACGGGACAAAACAAGGCTCGAAAATTGAAGGAAAAGGACAAGGCAAAGGATGATTACGCCTTTTTACAGGAAATGGCGTCCTCATTGCGATTAATGGCACGAAGAATGGGCAAAACAAATACAAGAAGAGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.58

Weight (kDa)

9.64

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 127, 217
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 251, 270
AgsI TTSAA 5 cut(s) 79, 130, 186, 224, 304
AluBI AGCT 2 cut(s) 38, 260
AluI AGCT 2 cut(s) 38, 260
Alw26I GTCTC 2 cut(s) 67, 252
AlwI GGATC 2 cut(s) 127, 217
AseI ATTAAT 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 178
AspA2I CCTAGG 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 18, 154
AsuC2I CCSGG 2 cut(s) 22, 252
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 2 cut(s) 18, 154
AvrII CCTAGG 1 cut(s) 269
BarI GAAGNNNNNNTAC 2 cut(s) 249, 281
BauI CACGAG 1 cut(s) 114
BccI CCATC 2 cut(s) 51, 401
BcnI CCSGG 2 cut(s) 22, 252
BcoDI GTCTC 2 cut(s) 67, 252
BfaI CTAG 1 cut(s) 270
BlnI CCTAGG 1 cut(s) 269
Bme1390I CCNGG 2 cut(s) 22, 252
Bme18I GGWCC 2 cut(s) 18, 154
BmgT120I GGNCC 2 cut(s) 18, 154
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 22, 252
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 2 cut(s) 22, 252
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 270
Bse3DI GCAATG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 2 cut(s) 205, 331
BseLI CCNNNNNNNGG 2 cut(s) 251, 270
BseMI GCAATG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 22, 251
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 251, 270
BsmAI GTCTC 2 cut(s) 67, 252
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 132, 209
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 127, 217
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 2 cut(s) 132, 209
BssNI GRCGYC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 397
BstACI GRCGYC 1 cut(s) 353
BstF5I GGATG 2 cut(s) 205, 331
BstKTI GATC 2 cut(s) 135, 212
BstMAI GTCTC 2 cut(s) 67, 252
BstMBI GATC 2 cut(s) 132, 209
BstSCI CCNGG 2 cut(s) 20, 250
BstX2I RGATCY 2 cut(s) 132, 209
BstYI RGATCY 2 cut(s) 132, 209
BtsCI GGATG 2 cut(s) 205, 331
Cfr13I GGNCC 2 cut(s) 18, 154
CseI GACGC 1 cut(s) 342
CviAII CATG 1 cut(s) 206
CviJI RGCY 5 cut(s) 38, 50, 260, 275, 293
CviKI_1 RGCY 5 cut(s) 38, 50, 260, 275, 293
DpnI GATC 2 cut(s) 134, 211
DpnII GATC 2 cut(s) 132, 209
Eam1104I CTCTTC 1 cut(s) 397
EarI CTCTTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 18, 154
EcoT14I CCWWGG 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 54, 160, 207, 266
FaqI GGGAC 1 cut(s) 294
FatI CATG 1 cut(s) 205
FokI GGATG 2 cut(s) 212, 338
FspBI CTAG 1 cut(s) 270
HapII CCGG 2 cut(s) 22, 251
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 1 cut(s) 112
HpaII CCGG 2 cut(s) 22, 251
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 142, 224
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 73, 95, 298
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 2 cut(s) 132, 209
LpnPI CCDG 4 cut(s) 31, 35, 264, 329
MaeI CTAG 1 cut(s) 270
MalI GATC 2 cut(s) 134, 211
MboI GATC 2 cut(s) 132, 209
MboII GAAGA 5 cut(s) 41, 142, 174, 390, 414
MflI RGATCY 2 cut(s) 132, 209
MluCI AATT 1 cut(s) 299
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 149, 367
MroXI GAANNNNTTC 1 cut(s) 178
MseI TTAA 1 cut(s) 368
MspI CCGG 2 cut(s) 22, 251
MspR9I CCNGG 2 cut(s) 22, 252
NciI CCSGG 2 cut(s) 22, 252
NdeII GATC 2 cut(s) 132, 209
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 178
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PshBI ATTAAT 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 18, 154
PsuI RGATCY 2 cut(s) 132, 209
SaqAI TTAA 1 cut(s) 368
Sau3AI GATC 2 cut(s) 132, 209
Sau96I GGNCC 2 cut(s) 18, 154
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 22, 252
SetI ASST 5 cut(s) 40, 106, 141, 262, 271
SinI GGWCC 2 cut(s) 18, 154
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 299
SspI AATATT 1 cut(s) 149
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 20, 250
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 295
TasI AATT 1 cut(s) 299
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 17, 48, 216
TspGWI ACGGA 1 cut(s) 234
VpaK11BI GGWCC 2 cut(s) 18, 154
VspI ATTAAT 1 cut(s) 368
XmaJI CCTAGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 178
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.