RLG00000002080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000705
Physical Location & Seq
Forward (+)
25179981 .. 25181000
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002080

Sequence Viewer

Length: 696 bp
ATGGAGAATTCTGAAAAGTCAATAAGAGGGAAAGCATTCTCCAGTCCAGAAGACGATGCACTATGCAAGGCATTTTTGTATATGGAACAAGCAAATATAAGCTTCAAAAATAAGGAGAAAATTGTGTTTGCTTATCATCATTGTTGGAGATATTTGAGAGATGCTATTACATGGAAAATTCTCGGGGGAACCAACAGCGACTCAAACAATGGTAATTCATCGTCGCAGTTTACCGAAACACAAGAAACACACATTTCACTTGATGGAGTTGGAGATGGAGATGAAGATGAAGAGCCGCCGGTTAGTATTCCGGCCACTAACCCAAATCAAAGGCCCATTGGGAAAAAGGCTGCGAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCTGATATGACTCAAGAACTTCGGCGATATAACAACATCATGGAAGCTAAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACGAGTATTTCAAGAGTCCGCACGACGGGAAGAAGAAAAGGCAGATTTGGAGTATTTGAAAATAGATACCACCTATATGCCTCCAGAACAGAGAGAATTCTTCGAGCATAAGAAAACTGAGATTTATAATAAAATGAGATTCCGTGGCTCCGGTAACCCATCGGTAACCTCAGACTTCGATACGTCATCGGACTATCATGTTGATCCGAATCCTGGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.63

Weight (kDa)

5.78

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 43 - 198 4.5e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AciI CCGC 2 cut(s) 296, 489
AclWI GGATC 1 cut(s) 668
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 3 cut(s) 7, 177, 566
AfiI CCNNNNNNNGG 2 cut(s) 495, 683
AgsI TTSAA 4 cut(s) 106, 371, 482, 529
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 4 cut(s) 102, 383, 431, 437
AluI AGCT 4 cut(s) 102, 383, 431, 437
AlwI GGATC 1 cut(s) 668
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 2 cut(s) 312, 332
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 3 cut(s) 7, 177, 566
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 333, 686
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 337
BccI CCATC 3 cut(s) 257, 269, 637
BciT130I CCWGG 1 cut(s) 684
BisI GCNGC 2 cut(s) 296, 351
BlsI GCNGC 2 cut(s) 297, 352
Bme1390I CCNGG 1 cut(s) 684
Bme18I GGWCC 1 cut(s) 686
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 333, 686
BmiI GGNNCC 2 cut(s) 190, 619
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 2 cut(s) 46, 151
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 25, 537
BpuEI CTTGAG 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 678
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 2 cut(s) 495, 683
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 678
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 613
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 2 cut(s) 495, 683
BseMII CTCAG 2 cut(s) 579, 654
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 314, 334
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 3 cut(s) 299, 311, 621
BslI CCNNNNNNNGG 2 cut(s) 495, 683
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 314, 334
BsoBI CYCGRG 1 cut(s) 182
Bsp143I GATC 1 cut(s) 673
BspACI CCGC 2 cut(s) 296, 489
BspANI GGCC 2 cut(s) 314, 334
BspCNI CTCAG 2 cut(s) 580, 653
BspLI GGNNCC 2 cut(s) 190, 619
BspPI GGATC 1 cut(s) 668
BspQI GCTCTTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 1 cut(s) 673
Bst2UI CCWGG 1 cut(s) 684
Bst6I CTCTTC 3 cut(s) 285, 350, 366
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 588, 640
BstDSI CCRYGG 1 cut(s) 613
BstEII GGTNACC 2 cut(s) 623, 634
BstKTI GATC 1 cut(s) 676
BstMBI GATC 1 cut(s) 673
BstNI CCWGG 1 cut(s) 684
BstPI GGTNACC 2 cut(s) 623, 634
BstSCI CCNGG 1 cut(s) 682
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 314, 334
BtgI CCRYGG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 333, 686
CviAII CATG 3 cut(s) 171, 424, 668
CviJI RGCY 9 cut(s) 102, 295, 314, 334, 350, 383, 431, 437, 618
CviKI_1 RGCY 9 cut(s) 102, 295, 314, 334, 350, 383, 431, 437, 618
DdeI CTNAG 2 cut(s) 588, 640
DpnI GATC 1 cut(s) 675
DpnII GATC 1 cut(s) 673
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 3 cut(s) 285, 350, 366
EarI CTCTTC 3 cut(s) 285, 350, 366
Eco47I GGWCC 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 182
Eco91I GGTNACC 2 cut(s) 623, 634
EcoO65I GGTNACC 2 cut(s) 623, 634
EcoRI GAATTC 2 cut(s) 7, 566
EcoRII CCWGG 1 cut(s) 682
FaeI CATG 3 cut(s) 174, 427, 671
FatI CATG 3 cut(s) 170, 423, 667
FauNDI CATATG 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 296, 351
Fsp4HI GCNGC 2 cut(s) 296, 351
GluI GCNGC 2 cut(s) 296, 351
GsuI CTGGAG 2 cut(s) 25, 537
HaeIII GGCC 2 cut(s) 314, 334
HapII CCGG 3 cut(s) 299, 311, 621
Hin1II CATG 3 cut(s) 174, 427, 671
HindIII AAGCTT 2 cut(s) 100, 381
HinfI GANTC 5 cut(s) 200, 394, 485, 609, 679
HpaII CCGG 3 cut(s) 299, 311, 621
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 5 cut(s) 13, 388, 643, 661, 678
Hpy188III TCNNGA 4 cut(s) 47, 398, 482, 554
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 2 cut(s) 226, 498
HpyAV CCTTC 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 2 cut(s) 59, 66
HpyF3I CTNAG 2 cut(s) 588, 640
HpySE526I ACGT 1 cut(s) 653
Hsp92II CATG 3 cut(s) 174, 427, 671
Kzo9I GATC 1 cut(s) 673
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 623
LpnPI CCDG 7 cut(s) 55, 60, 312, 324, 567, 634, 669
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 46, 151
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 2 cut(s) 623, 634
MalI GATC 1 cut(s) 675
MboI GATC 1 cut(s) 673
MluCI AATT 5 cut(s) 7, 120, 177, 214, 566
MlyI GAGTC 3 cut(s) 194, 388, 494
MmeI TCCRAC 2 cut(s) 125, 250
MnlI CCTC 5 cut(s) 20, 351, 367, 561, 649
MroXI GAANNNNTTC 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 3 cut(s) 299, 311, 621
MspR9I CCNGG 1 cut(s) 684
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 465
NdeII GATC 1 cut(s) 673
NlaIII CATG 3 cut(s) 174, 427, 671
NlaIV GGNNCC 2 cut(s) 190, 619
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 609, 679
PkrI GCNGC 2 cut(s) 297, 352
PleI GAGTC 3 cut(s) 194, 388, 493
PpsI GAGTC 3 cut(s) 194, 388, 493
PsiI TTATAA 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 2 cut(s) 623, 634
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 2 cut(s) 190, 619
PspPI GGNCC 2 cut(s) 333, 686
RseI CAYNNNNRTG 1 cut(s) 545
SapI GCTCTTC 1 cut(s) 285
SatI GCNGC 2 cut(s) 296, 351
Sau3AI GATC 1 cut(s) 673
Sau96I GGNCC 2 cut(s) 333, 686
SchI GAGTC 3 cut(s) 194, 388, 494
ScrFI CCNGG 1 cut(s) 684
SetI ASST 7 cut(s) 104, 385, 433, 439, 545, 641, 656
SfaNI GCATC 2 cut(s) 46, 151
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 5 cut(s) 7, 120, 177, 214, 566
SsiI CCGC 2 cut(s) 296, 489
StyD4I CCNGG 1 cut(s) 682
TaiI ACGT 1 cut(s) 656
TaqI TCGA 2 cut(s) 573, 648
TasI AATT 5 cut(s) 7, 120, 177, 214, 566
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 2 cut(s) 609, 679
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 3 cut(s) 207, 297, 303
TspGWI ACGGA 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 3 cut(s) 7, 177, 566
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.