Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000705

Physical Location & Seq

Genomic Coordinates Reverse (-)

967104 .. 968082

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCCACTCCTTCTCTCAAAGGTGTGAATTGGACAAGAAAAGAAGATGAAGTTCTTTGTGTTGCATATATGAAAGTATCCGAAAATTCTACGAAAGGTAATGGCCAAAAGGGAGACGGCATTTGGAAACAAGTGGAGAGAAAATTAATTGATGGCTTCAATGGCAATCCTCCAAATGCAAGATCGGATGAAAGTTGTAAGTCTCGATGGCAAAAATTTCTCTTTCCATACATGAATAAGTGGCATTCTTGTGTCACACGTTCTGAGAGAAGGCTTCATAGTGGAGCAAATCACATAGAACAACACCTCGCCGATGATATGTTTAGGCAAGACATGAAAGGGAAATCGTTCAATTTTCATAGTTGCTACGATTTGTGCAAAGATTGGTTGACATTTGACACACCCTCGCAAGAACATTTTGGTCCACCCCCGGTGCAAAGAAACCACCCGGTGTCCTTGGAAGATGATGATGATCCTGTCGATAGTAGTTCAACACCAACTTTATCTAGGGATCCGATTCCTAGGCCGATGGGAAGAAATGCCGCAAGAAGAAAGCAAATCAAGGACCAAGAAAAGGAGAAGAAAGCCTTTGAAGATAAGTTATTAGCTCGCATGGATCGATTGGCGGAAGATAATGCGAAGGCAGAAGAGGCAAAAGCAATAAGGGAGAAGATGAAGGAAGATCGACGAGAGAGAGATAGAGAAGAAGCTATTTTAATGATGCAAACCGTTAATTTTACTCCAAAGAGCAAGACTTATTTTGATGGGAAAAAGAGAGAAGCACTTGAAAAGCTAAGCGCACGGGAATTGTTTCCGAATACCGGCTCAACATCGAATGACTATCATCCACAAATACCATTCGATGAAGACGAATACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

293

Amino Acids

34.12

Weight (kDa)

7.65

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	115 - 260	1e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica	MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica	Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis	pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis	RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata	RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora	Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii	Rroxscaffold_1G00024040
rosa_samantha	Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana	Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	543, 626
AclWI	GGATC	4 cut(s)	467, 506, 519, 624
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	85, 215
AdeI	CACNNNGTG	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	574, 821
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	5 cut(s)	160, 352, 492, 593, 788
AluBI	AGCT	3 cut(s)	608, 710, 793
AluI	AGCT	3 cut(s)	608, 710, 793
Alw26I	GTCTC	2 cut(s)	108, 207
AlwI	GGATC	4 cut(s)	467, 506, 519, 624
AoxI	GGCC	2 cut(s)	103, 524
ApoI	RAATTY	2 cut(s)	85, 215
AseI	ATTAAT	1 cut(s)	146
Asp700I	GAANNNNTTC	2 cut(s)	347, 810
AspA2I	CCTAGG	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	2 cut(s)	422, 565
AsuC2I	CCSGG	2 cut(s)	431, 449
AvaII	GGWCC	2 cut(s)	422, 565
AvrII	CCTAGG	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	105
BamHI	GGATCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	873
BccI	CCATC	4 cut(s)	146, 201, 523, 758
BceAI	ACGGC	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	431, 449
BcoDI	GTCTC	2 cut(s)	108, 207
BfaI	CTAG	2 cut(s)	507, 522
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	543
BlnI	CCTAGG	1 cut(s)	521
BlpI	GCTNAGC	1 cut(s)	794
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	431, 449
Bme18I	GGWCC	2 cut(s)	422, 565
BmgT120I	GGNCC	2 cut(s)	422, 565
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	431, 449
BmsI	GCATC	1 cut(s)	711
BpiI	GAAGAC	1 cut(s)	873
Bpu1102I	GCTNAGC	1 cut(s)	794
BpuMI	CCSGG	2 cut(s)	431, 449
Bsa29I	ATCGAT	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	429, 456, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 821
Bse118I	RCCGGY	1 cut(s)	821
Bse8I	GATNNNNATC	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	3 cut(s)	429, 456, 521
BseGI	GGATG	2 cut(s)	193, 844
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	574, 821
BseMII	CTCAG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	105, 526
BshVI	ATCGAT	1 cut(s)	619
BsiSI	CCGG	3 cut(s)	431, 449, 822
BslI	CCNNNNNNNGG	2 cut(s)	574, 821
BsmAI	GTCTC	2 cut(s)	108, 207
BsmBI	CGTCTC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	105, 526
Bsp143I	GATC	5 cut(s)	182, 472, 511, 616, 682
Bsp1720I	GCTNAGC	1 cut(s)	794
BspACI	CCGC	2 cut(s)	543, 626
BspANI	GGCC	2 cut(s)	105, 526
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	4 cut(s)	467, 506, 519, 624
BsrFI	RCCGGY	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	3 cut(s)	429, 456, 521
BssMI	GATC	5 cut(s)	182, 472, 511, 616, 682
BssT1I	CCWWGG	2 cut(s)	456, 521
Bst4CI	ACNGT	2 cut(s)	730, 878
Bst6I	CTCTTC	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	2 cut(s)	264, 794
BstF5I	GGATG	2 cut(s)	193, 844
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	5 cut(s)	185, 475, 514, 619, 685
BstMAI	GTCTC	2 cut(s)	108, 207
BstMBI	GATC	5 cut(s)	182, 472, 511, 616, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 650
BstSCI	CCNGG	2 cut(s)	429, 447
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
Bsu15I	ATCGAT	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	105, 526
BsuTUI	ATCGAT	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	193, 844
Cac8I	GCNNGC	1 cut(s)	610
CfoI	GCGC	1 cut(s)	800
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	2 cut(s)	422, 565
ClaI	ATCGAT	1 cut(s)	619
CviAII	CATG	3 cut(s)	232, 334, 613
CviJI	RGCY	9 cut(s)	105, 156, 274, 526, 587, 608, 710, 793, 825
CviKI_1	RGCY	9 cut(s)	105, 156, 274, 526, 587, 608, 710, 793, 825
DdeI	CTNAG	2 cut(s)	264, 794
DpnI	GATC	5 cut(s)	184, 474, 513, 618, 684
DpnII	GATC	5 cut(s)	182, 472, 511, 616, 682
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	641
Eco130I	CCWWGG	2 cut(s)	456, 521
Eco47I	GGWCC	2 cut(s)	422, 565
EcoT14I	CCWWGG	2 cut(s)	456, 521
ErhI	CCWWGG	2 cut(s)	456, 521
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	3 cut(s)	235, 337, 616
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	3 cut(s)	231, 333, 612
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	2 cut(s)	200, 831
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	2 cut(s)	507, 522
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	105, 526
HapII	CCGG	3 cut(s)	431, 449, 822
HhaI	GCGC	1 cut(s)	800
Hin1II	CATG	3 cut(s)	235, 337, 616
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	3 cut(s)	431, 449, 822
Hpy166II	GTNNAC	3 cut(s)	6, 390, 425
Hpy188I	TCNGA	5 cut(s)	82, 187, 265, 516, 816
Hpy188III	TCNNGA	1 cut(s)	204
Hpy8I	GTNNAC	3 cut(s)	6, 390, 425
Hpy99I	CGWCG	1 cut(s)	690
HpyAV	CCTTC	4 cut(s)	21, 264, 634, 670
HpyCH4III	ACNGT	2 cut(s)	730, 878
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	5 cut(s)	65, 179, 378, 436, 724
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 650
HpyF3I	CTNAG	2 cut(s)	264, 794
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	235, 337, 616
HspAI	GCGC	1 cut(s)	798
Kzo9I	GATC	5 cut(s)	182, 472, 511, 616, 682
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	4 cut(s)	444, 462, 489, 835
LweI	GCATC	1 cut(s)	711
MaeI	CTAG	2 cut(s)	507, 522
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	5 cut(s)	184, 474, 513, 618, 684
MboI	GATC	5 cut(s)	182, 472, 511, 616, 682
MflI	RGATCY	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	8 cut(s)	28, 85, 143, 147, 215, 352, 733, 806
MluNI	TGGCCA	1 cut(s)	105
MnlI	CCTC	4 cut(s)	180, 317, 415, 643
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	347, 810
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	4 cut(s)	146, 716, 732, 880
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	431, 449, 822
MspR9I	CCNGG	2 cut(s)	431, 449
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	162, 650
NciI	CCSGG	2 cut(s)	431, 449
NdeII	GATC	5 cut(s)	182, 472, 511, 616, 682
NlaIII	CATG	3 cut(s)	235, 337, 616
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	2 cut(s)	616, 867
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	2 cut(s)	347, 810
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	422, 565
PsuI	RGATCY	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	146, 716, 732, 880
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	5 cut(s)	182, 472, 511, 616, 682
Sau96I	GGNCC	2 cut(s)	422, 565
ScrFI	CCNGG	2 cut(s)	431, 449
SetI	ASST	7 cut(s)	25, 100, 262, 309, 610, 712, 795
SfaNI	GCATC	1 cut(s)	711
SinI	GGWCC	2 cut(s)	422, 565
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	8 cut(s)	28, 85, 143, 147, 215, 352, 733, 806
SsiI	CCGC	2 cut(s)	543, 626
SspMI	CTAG	2 cut(s)	507, 522
StyD4I	CCNGG	2 cut(s)	429, 447
StyI	CCWWGG	2 cut(s)	456, 521
TaaI	ACNGT	2 cut(s)	730, 878
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	6 cut(s)	205, 480, 619, 685, 833, 861
TasI	AATT	8 cut(s)	28, 85, 143, 147, 215, 352, 733, 806
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	4 cut(s)	146, 716, 732, 880
Tru9I	TTAA	4 cut(s)	146, 716, 732, 880
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	9 cut(s)	63, 86, 204, 248, 266, 347, 350, 689, 879
VpaK11BI	GGWCC	2 cut(s)	422, 565
VspI	ATTAAT	1 cut(s)	146
XapI	RAATTY	2 cut(s)	85, 215
XmaJI	CCTAGG	1 cut(s)	521
XmnI	GAANNNNTTC	2 cut(s)	347, 810
XspI	CTAG	2 cut(s)	507, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.