Rmu_sc0014762.1_g000006

regulation of endocannabinoid signaling pathway

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014762.1
Physical Location & Seq
Reverse (-)
28092 .. 29114
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014762.1_g000006.1.cds

Sequence Viewer

Length: 930 bp
atggagaattctgaaaagtcaataagagggaaagcattcgccagtccagaagatgacgcactatgcaaggcatttttgtatgtaagtcaagattctgctattgggaccgggcaaacaaagattgtattttggcgacgaattcatgcaaaatgggaagaattgtatgttgcagaaacagggcttgacccaaagagaaatccaggtagcctccgtgctcgattcaaaaatatcaaaactcaatgtactaaatatgctgcaagagtgacagaaacaaaacgaagacggattagcggttttactgaagctgacattatggaacaagcaaatataagcttcaaaaataaggagaaaattgtgtttgcttatcatcattgttggagatatttgaaagatgctattacatggaaaattcccgggggaaccaacagcgactcaaacaacggtaattcatcgtcgcaatttaccgaaacacaagaaacacacatttcacttgatggagatggagatggagatggagatgaagagccgccggttagtattccggccactaacccaaatcaaaggcccattgggaaaaaggctgcgaagaggaagattattgaagaggggcaagcttctgatatgactcaagaacttcggcgatataacaacatcatggaagctggagctattaggaagaaagagaaggacaaacatatgctacgagtatttcaagagtccgcacgacgggaagaagaaaaggcagatttggagtatttgaaaatagataccacctatatgcctccagaacagagagaattcttcgagcataagaaaactgagatttataataaaatgagattccgtggctccgattcctcaagctccggtaacccatcggtaacctcagacttcgatacgtcatcggaaaaaaagagctcaataatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.27

Weight (kDa)

8.73

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AciI CCGC 3 cut(s) 291, 527, 720
AcoI YGGCCR 1 cut(s) 543
AcsI RAATTY 4 cut(s) 7, 138, 408, 797
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 726
AgsI TTSAA 6 cut(s) 223, 337, 388, 602, 713, 760
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 7 cut(s) 305, 333, 614, 662, 668, 864, 918
AluI AGCT 7 cut(s) 305, 333, 614, 662, 668, 864, 918
Alw21I GWGCWC 2 cut(s) 217, 920
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 2 cut(s) 543, 563
ApeKI GCWGC 2 cut(s) 254, 581
ApoI RAATTY 4 cut(s) 7, 138, 408, 797
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 105, 564
AsuC2I CCSGG 3 cut(s) 109, 414, 415
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 920
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 2 cut(s) 217, 920
BbvI GCAGC 2 cut(s) 241, 568
BccI CCATC 5 cut(s) 488, 494, 500, 506, 883
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 3 cut(s) 109, 414, 415
BisI GCNGC 3 cut(s) 255, 527, 582
BlsI GCNGC 3 cut(s) 256, 528, 583
Bme1390I CCNGG 4 cut(s) 109, 201, 414, 415
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 105, 564
BmiI GGNNCC 3 cut(s) 106, 421, 850
BmrFI CCNGG 4 cut(s) 109, 201, 414, 415
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 2 cut(s) 684, 768
BpuEI CTTGAG 2 cut(s) 612, 844
BpuMI CCSGG 3 cut(s) 109, 414, 415
BsaJI CCNNGG 3 cut(s) 413, 414, 844
BsaWI WCCGGW 1 cut(s) 866
Bsc4I CCNNNNNNNGG 1 cut(s) 726
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 3 cut(s) 413, 414, 844
BseLI CCNNNNNNNGG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 810, 900
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 241, 568
BshFI GGCC 2 cut(s) 545, 565
BsiHKAI GWGCWC 2 cut(s) 217, 920
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 5 cut(s) 108, 414, 530, 542, 867
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 545, 565
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 217, 920
BspACI CCGC 3 cut(s) 291, 527, 720
BspANI GGCC 2 cut(s) 545, 565
BspCNI CTCAG 2 cut(s) 811, 899
BspLI GGNNCC 3 cut(s) 106, 421, 850
BspQI GCTCTTC 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 3 cut(s) 413, 414, 844
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 3 cut(s) 516, 581, 597
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 2 cut(s) 819, 886
BstDSI CCRYGG 1 cut(s) 844
BstEII GGTNACC 2 cut(s) 869, 880
BstNI CCWGG 1 cut(s) 201
BstPI GGTNACC 2 cut(s) 869, 880
BstSCI CCNGG 4 cut(s) 107, 199, 412, 413
BstV1I GCAGC 2 cut(s) 241, 568
BstV2I GAAGAC 1 cut(s) 286
BsuRI GGCC 2 cut(s) 545, 565
BtgI CCRYGG 1 cut(s) 844
Cac8I GCNNGC 1 cut(s) 612
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 2 cut(s) 105, 564
Cfr9I CCCGGG 1 cut(s) 413
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 143, 402, 655
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 819, 886
EaeI YGGCCR 1 cut(s) 543
Eam1104I CTCTTC 3 cut(s) 516, 581, 597
EarI CTCTTC 3 cut(s) 516, 581, 597
Ecl136II GAGCTC 1 cut(s) 918
Eco24I GRGCYC 1 cut(s) 920
Eco47I GGWCC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 2 cut(s) 869, 880
EcoICRI GAGCTC 1 cut(s) 918
EcoO65I GGTNACC 2 cut(s) 869, 880
EcoRI GAATTC 3 cut(s) 7, 138, 797
EcoRII CCWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 920
FaeI CATG 3 cut(s) 146, 405, 658
FaqI GGGAC 1 cut(s) 118
FatI CATG 3 cut(s) 142, 401, 654
FauNDI CATATG 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 255, 527, 582
FriOI GRGCYC 1 cut(s) 920
Fsp4HI GCNGC 3 cut(s) 255, 527, 582
GluI GCNGC 3 cut(s) 255, 527, 582
GsuI CTGGAG 2 cut(s) 684, 768
HaeIII GGCC 2 cut(s) 545, 565
HapII CCGG 5 cut(s) 108, 414, 530, 542, 867
HgaI GACGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 146, 405, 658
HindIII AAGCTT 2 cut(s) 331, 612
HinfI GANTC 7 cut(s) 92, 219, 431, 625, 716, 840, 854
HpaII CCGG 5 cut(s) 108, 414, 530, 542, 867
Hpy188I TCNGA 5 cut(s) 13, 619, 853, 889, 907
Hpy188III TCNNGA 5 cut(s) 47, 89, 629, 713, 785
Hpy99I CGWCG 3 cut(s) 138, 457, 729
HpyAV CCTTC 1 cut(s) 679
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 899
HpyCH4V TGCA 4 cut(s) 66, 146, 170, 257
HpyF3I CTNAG 2 cut(s) 819, 886
HpySE526I ACGT 1 cut(s) 899
Hsp92II CATG 3 cut(s) 146, 405, 658
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 665, 854, 869
Lsp1109I GCAGC 2 cut(s) 241, 568
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 3 cut(s) 262, 869, 880
MhlI GDGCHC 2 cut(s) 217, 920
MluCI AATT 9 cut(s) 7, 138, 158, 351, 408, 445, 458, 797, 924
MlyI GAGTC 3 cut(s) 425, 619, 725
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 7 cut(s) 20, 218, 582, 598, 792, 868, 895
MroXI GAANNNNTTC 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 776
MspI CCGG 5 cut(s) 108, 414, 530, 542, 867
MspR9I CCNGG 4 cut(s) 109, 201, 414, 415
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 1 cut(s) 201
NciI CCSGG 3 cut(s) 109, 414, 415
NdeI CATATG 1 cut(s) 696
NlaIII CATG 3 cut(s) 146, 405, 658
NlaIV GGNNCC 3 cut(s) 106, 421, 850
NmuCI GTSAC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 516
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 4 cut(s) 92, 219, 840, 854
PkrI GCNGC 3 cut(s) 256, 528, 583
PleI GAGTC 3 cut(s) 425, 619, 724
PpsI GAGTC 3 cut(s) 425, 619, 724
PsiI TTATAA 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 920
Psp6I CCWGG 1 cut(s) 199
PspEI GGTNACC 2 cut(s) 869, 880
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 106, 421, 850
PspPI GGNCC 2 cut(s) 105, 564
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 1 cut(s) 920
SapI GCTCTTC 1 cut(s) 516
SatI GCNGC 3 cut(s) 255, 527, 582
Sau96I GGNCC 2 cut(s) 105, 564
SchI GAGTC 3 cut(s) 425, 619, 725
ScrFI CCNGG 4 cut(s) 109, 201, 414, 415
SduI GDGCHC 2 cut(s) 217, 920
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 1 cut(s) 105
SmaI CCCGGG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 627, 859
SmoI CTYRAG 2 cut(s) 627, 859
Sse9I AATT 9 cut(s) 7, 138, 158, 351, 408, 445, 458, 797, 924
SsiI CCGC 3 cut(s) 291, 527, 720
SstI GAGCTC 1 cut(s) 920
StyD4I CCNGG 4 cut(s) 107, 199, 412, 413
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 902
TaqI TCGA 3 cut(s) 217, 804, 894
TasI AATT 9 cut(s) 7, 138, 158, 351, 408, 445, 458, 797, 924
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 4 cut(s) 92, 219, 840, 854
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 254, 581
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 131, 438, 534
TspGWI ACGGA 3 cut(s) 200, 298, 833
TspMI CCCGGG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 4 cut(s) 7, 138, 408, 797
XmaI CCCGGG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.