Rmu_sc0000441.1_g000135

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000441.1
OG0000705
Physical Location & Seq
Forward (+)
497587 .. 498081
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000441.1_g000135.1.cds

Sequence Viewer

Length: 495 bp
atgtttagcgaagacatgaaaggaaaatcattcaattttcatagttgctatgatttgtgcaaagattgggtgacatttgacacaccctctcaagaacattttggtccacccccagtgcaaagaaacctcccagtgtccttggaagatgatgatgatcctgttgatagtaattcaacaccaacttcatatagggatctgattcctaggccgatgggaagaaatgctgcaagaagaaagcaaatcaaggaccaagaaaaggagaagaaagcctttgaaaataagttattagcgctcatggatcaattggcggaagataatgcgaaggcagaagaggcaaaagcaataagggagaagatgaaggaggatcgaagagagagaaatagagaagaagctattctaatgatgcaaaccattaattttactccaaagagaaagactttttttttttcagttataaaagagtatcaaagggtttcactcttgcccccatggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

19.33

Weight (kDa)

6.76

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AciI CCGC 1 cut(s) 308
AclWI GGATC 4 cut(s) 149, 201, 306, 372
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 3 cut(s) 34, 174, 275
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
AlwI GGATC 4 cut(s) 149, 201, 306, 372
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 224
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 1 cut(s) 393
AspA2I CCTAGG 1 cut(s) 203
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 104, 247
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 104, 247
AvrII CCTAGG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 211
BccI CCATC 1 cut(s) 205
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 1 cut(s) 225
BlnI CCTAGG 1 cut(s) 203
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 2 cut(s) 104, 247
BmgT120I GGNCC 2 cut(s) 104, 247
BmrI ACTGGG 2 cut(s) 107, 125
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 2 cut(s) 107, 125
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 138, 203, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 113, 131
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 138, 203, 488
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 2 cut(s) 113, 131
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 4 cut(s) 154, 193, 298, 364
Bsp19I CCATGG 1 cut(s) 488
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 208
BspPI GGATC 4 cut(s) 149, 201, 306, 372
BsrI ACTGG 2 cut(s) 113, 131
BssECI CCNNGG 3 cut(s) 138, 203, 488
BssMI GATC 4 cut(s) 154, 193, 298, 364
BssT1I CCWWGG 3 cut(s) 138, 203, 488
Bst6I CTCTTC 2 cut(s) 324, 364
BstDSI CCRYGG 1 cut(s) 488
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 4 cut(s) 157, 196, 301, 367
BstMBI GATC 4 cut(s) 154, 193, 298, 364
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 488
BtsIMutI CAGTG 2 cut(s) 120, 138
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 104, 247
CviAII CATG 3 cut(s) 16, 295, 489
CviJI RGCY 3 cut(s) 208, 269, 392
CviKI_1 RGCY 3 cut(s) 208, 269, 392
DpnI GATC 4 cut(s) 156, 195, 300, 366
DpnII GATC 4 cut(s) 154, 193, 298, 364
Eam1104I CTCTTC 2 cut(s) 324, 364
EarI CTCTTC 2 cut(s) 324, 364
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 3 cut(s) 138, 203, 488
Eco47I GGWCC 2 cut(s) 104, 247
Eco47III AGCGCT 1 cut(s) 291
EcoT14I CCWWGG 3 cut(s) 138, 203, 488
ErhI CCWWGG 3 cut(s) 138, 203, 488
FaeI CATG 3 cut(s) 19, 298, 492
FaiI YATR 8 cut(s) 17, 42, 51, 187, 189, 296, 455, 490
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 3 cut(s) 15, 294, 488
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 291
GluI GCNGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 1 cut(s) 208
HhaI GCGC 1 cut(s) 292
Hin1II CATG 3 cut(s) 19, 298, 492
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 1 cut(s) 199
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 316, 352
HpyCH4V TGCA 4 cut(s) 60, 118, 227, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
Hsp92II CATG 3 cut(s) 19, 298, 492
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 4 cut(s) 154, 193, 298, 364
LpnPI CCDG 3 cut(s) 126, 144, 171
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 393
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 156, 195, 300, 366
MboI GATC 4 cut(s) 154, 193, 298, 364
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 1 cut(s) 193
MluCI AATT 4 cut(s) 34, 169, 302, 415
MnlI CCTC 4 cut(s) 97, 137, 325, 355
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 1 cut(s) 414
MunI CAATTG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 332
NcoI CCATGG 1 cut(s) 488
NdeII GATC 4 cut(s) 154, 193, 298, 364
NlaIII CATG 3 cut(s) 19, 298, 492
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 414
PsiI TTATAA 1 cut(s) 455
PspPI GGNCC 2 cut(s) 104, 247
PsuI RGATCY 1 cut(s) 193
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 154, 193, 298, 364
Sau96I GGNCC 2 cut(s) 104, 247
SetI ASST 2 cut(s) 129, 394
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 2 cut(s) 104, 247
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 4 cut(s) 34, 169, 302, 415
SsiI CCGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 204
StyI CCWWGG 3 cut(s) 138, 203, 488
TaqI TCGA 1 cut(s) 367
TasI AATT 4 cut(s) 34, 169, 302, 415
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 120, 138
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 29, 32, 174, 371
TspRI CASTG 2 cut(s) 120, 138
VpaK11BI GGWCC 2 cut(s) 104, 247
VspI ATTAAT 1 cut(s) 414
XmaJI CCTAGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.