Rw6G008970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000705
Physical Location & Seq
Forward (+)
15076754 .. 15077658
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008970.1

Sequence Viewer

Length: 618 bp
ATGGAGAAGGGTACCAACCAATCAAAGGAATGGCTTTGGGCACAAATCCAACAAACATACTTGGAGTATTATGAATGCACCAAACTTCCGAAGGCAAGAACGGAAGAGAGTTGTAATTCTCGATGGAAAAAACATATATTTCCAAACATGAACAAATGGCACCAATGTCTCAAGCTTTGTAATTGTTATAATTTGTGCAAAAATTGGCTGACTTTTCAAGATCCACCTCAAGAACAATTTGGTCCAACACTGGTTCAACGAAACACCTCAATTTCTTTGGAGGAGGATGAGGATCCCATTGAGGATTCTCCTACTTCATCTCAAATGAGAATTCCTAGACCTATGGGAAGAAATGCAGCAAGAAAAACGAGGCAAAAGAGCAAAGAGGCAGAAGTCAAAGCCATTGGAGAAGAAATTGTTGCACAAATGAAAGAGGCGGAAGAGGAAATGAAGAGAAGAGAGAAGAAAAGGAAGGATCGAAGAGAGGATAAAGAGTATTTTGATGGGAAGAAAAGAGAAGCTCTCCACCAACTCCCAGGACGTGAATTGTTTCCAAATTCCAGTGAGATATCCAATGTCTATTGTCCACAAATGTCATCCGATGAAGATGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

24.33

Weight (kDa)

6.85

Isoelectric Point (pI)

73.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
Acc65I GGTACC 1 cut(s) 11
AccB1I GGYRCC 2 cut(s) 11, 159
AciI CCGC 1 cut(s) 437
AclWI GGATC 4 cut(s) 215, 287, 300, 483
AcsI RAATTY 2 cut(s) 330, 556
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 2 cut(s) 218, 257
AjiI CACGTC 1 cut(s) 542
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 3 cut(s) 175, 521, 614
AluI AGCT 3 cut(s) 175, 521, 614
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 4 cut(s) 215, 287, 300, 483
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 330, 556
Asp700I GAANNNNTTC 1 cut(s) 549
Asp718I GGTACC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 43
BamHI GGATCC 1 cut(s) 292
BanI GGYRCC 2 cut(s) 11, 159
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 117, 497
BciT130I CCWGG 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 13, 161, 294
BmrFI CCNGG 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 507, 539
BpuEI CTTGAG 2 cut(s) 155, 213
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 255, 561
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 2 cut(s) 292, 596
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 255, 561
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 368
BshNI GGYRCC 2 cut(s) 11, 159
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 3 cut(s) 220, 292, 475
BspACI CCGC 1 cut(s) 437
BspLI GGNNCC 3 cut(s) 13, 161, 294
BspPI GGATC 4 cut(s) 215, 287, 300, 483
BspT107I GGYRCC 2 cut(s) 11, 159
BsrI ACTGG 2 cut(s) 255, 561
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 3 cut(s) 220, 292, 475
Bst2UI CCWGG 1 cut(s) 537
Bst6I CTCTTC 5 cut(s) 99, 435, 446, 451, 475
BstF5I GGATG 2 cut(s) 292, 596
BstKTI GATC 3 cut(s) 223, 295, 478
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 220, 292, 475
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 535
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 220, 292
BstYI RGATCY 2 cut(s) 220, 292
BtrI CACGTC 1 cut(s) 542
BtsCI GGATG 2 cut(s) 292, 596
BtsIMutI CAGTG 2 cut(s) 248, 568
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 148
CviJI RGCY 6 cut(s) 34, 175, 208, 401, 521, 614
CviKI_1 RGCY 6 cut(s) 34, 175, 208, 401, 521, 614
CviQI GTAC 1 cut(s) 12
DpnI GATC 3 cut(s) 222, 294, 477
DpnII GATC 3 cut(s) 220, 292, 475
Eam1104I CTCTTC 5 cut(s) 99, 435, 446, 451, 475
EarI CTCTTC 5 cut(s) 99, 435, 446, 451, 475
EciI GGCGGA 1 cut(s) 452
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 535
EcoRV GATATC 1 cut(s) 570
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 58, 72, 135, 137, 149, 189, 344
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 299, 583
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 357
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 2 cut(s) 173, 612
HinfI GANTC 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 587
Hpy188I TCNGA 2 cut(s) 90, 601
Hpy188III TCNNGA 3 cut(s) 120, 218, 230
Hpy8I GTNNAC 1 cut(s) 587
HpyAV CCTTC 2 cut(s) 85, 466
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 4 cut(s) 78, 198, 356, 422
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 1 cut(s) 151
KpnI GGTACC 1 cut(s) 15
Kzo9I GATC 3 cut(s) 220, 292, 475
LpnPI CCDG 4 cut(s) 236, 522, 549, 574
Lsp1109I GCAGC 1 cut(s) 368
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 541
MalI GATC 3 cut(s) 222, 294, 477
MboI GATC 3 cut(s) 220, 292, 475
MflI RGATCY 2 cut(s) 220, 292
MhlI GDGCHC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 73, 269
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 1 cut(s) 616
MspR9I CCNGG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 1 cut(s) 537
NdeII GATC 3 cut(s) 220, 292, 475
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 3 cut(s) 13, 161, 294
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 358
PsiI TTATAA 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 3 cut(s) 13, 161, 294
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 2 cut(s) 220, 292
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 616
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 220, 292, 475
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 537
SduI GDGCHC 1 cut(s) 43
SetI ASST 7 cut(s) 177, 229, 269, 343, 523, 544, 616
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 170, 228
SmoI CTYRAG 2 cut(s) 170, 228
SsiI CCGC 1 cut(s) 437
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 535
TaiI ACGT 1 cut(s) 544
TaqI TCGA 2 cut(s) 121, 478
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 616
Tru9I TTAA 1 cut(s) 616
TscAI CASTG 2 cut(s) 255, 568
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 6 cut(s) 87, 164, 306, 443, 464, 618
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 255, 568
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 2 cut(s) 330, 556
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.