Rw5G026320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000705
Physical Location & Seq
Forward (+)
38068299 .. 38069067
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026320.1

Sequence Viewer

Length: 615 bp
ATGAACAAATGGCATCAATGTCTCAAGCGTTCCGAAAGGAGGGATCAAAGCGGAGCTAATCTCCAAGATATAATGAGTTCTTATTTTATTAATTTATTGTTTTATTTATTAGGGAGAAAAATTCAACGGCAAGCCGAGAGTTTCTATGGGGACGACTTCGAAGGACAACCATTTAAGTTTGGTAATTGTTATAATTTGTGCAAAGATTGGGTGACGTTTCAAGATCCACCTCAAGAACAATTTGGTCCAACACCGGAGGATGAGAATCCCATTGAGGATTCTCCTACTTCATCTCAAACGCAAATTCCTAGGCCTATGGGAAGAAATTCCGCAAGAAAAATAAGGCAAAAGGGCAAAAAGGCTGAAGTCAAAGCCATTGGAGAAGAAATGGTTGCCGGAATGAGAGAAATGGCGGCACAAATGAAAGAGGCGAAAGAGGAAAGGAAGAGAAGAGAGAAGAAAAGGGAGGATCGAAGAGAGGTTGCTAGGTTAGAGGCTATTTTAATGATGCAAACCATTGATTTTACTCCAAGGAGACGTGAATTGTTTACAAATTCCGGCGAGACAACCAATGTCTATCGTCCACAAATGCCATCCGATAAAGATGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.97

Weight (kDa)

8.92

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AciI CCGC 3 cut(s) 51, 330, 413
AclWI GGATC 3 cut(s) 51, 218, 477
AcsI RAATTY 4 cut(s) 120, 303, 325, 553
AcuI CTGAAG 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 2 cut(s) 125, 221
AjiI CACGTC 1 cut(s) 539
AluBI AGCT 2 cut(s) 56, 611
AluI AGCT 2 cut(s) 56, 611
Alw26I GTCTC 3 cut(s) 26, 529, 557
AlwI GGATC 3 cut(s) 51, 218, 477
AoxI GGCC 1 cut(s) 311
ApoI RAATTY 4 cut(s) 120, 303, 325, 553
AseI ATTAAT 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 325
AspA2I CCTAGG 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 223
AsuII TTCGAA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 245
AvrII CCTAGG 1 cut(s) 308
BccI CCATC 1 cut(s) 601
BceAI ACGGC 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 26, 529, 557
BfaI CTAG 2 cut(s) 309, 486
BisI GCNGC 1 cut(s) 414
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 1 cut(s) 415
Bme18I GGWCC 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 245
BmsI GCATC 2 cut(s) 22, 498
BplI GAGNNNNNCTC 2 cut(s) 45, 77
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 8, 216
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 308, 530
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 308, 530
BseGI GGATG 2 cut(s) 265, 593
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 39
BshFI GGCC 1 cut(s) 313
BsiSI CCGG 3 cut(s) 254, 396, 558
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 3 cut(s) 26, 529, 557
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 159
Bsp143I GATC 3 cut(s) 43, 223, 469
BspACI CCGC 3 cut(s) 51, 330, 413
BspANI GGCC 1 cut(s) 313
BspPI GGATC 3 cut(s) 51, 218, 477
BspT104I TTCGAA 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 308, 530
BssMI GATC 3 cut(s) 43, 223, 469
BssT1I CCWWGG 2 cut(s) 308, 530
Bst6I CTCTTC 3 cut(s) 440, 445, 469
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 2 cut(s) 265, 593
BstKTI GATC 3 cut(s) 46, 226, 472
BstMAI GTCTC 3 cut(s) 26, 529, 557
BstMBI GATC 3 cut(s) 43, 223, 469
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 313
BtrI CACGTC 1 cut(s) 539
BtsCI GGATG 2 cut(s) 265, 593
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 245
CviJI RGCY 7 cut(s) 56, 134, 313, 362, 374, 497, 611
CviKI_1 RGCY 7 cut(s) 56, 134, 313, 362, 374, 497, 611
DpnI GATC 3 cut(s) 45, 225, 471
DpnII GATC 3 cut(s) 43, 223, 469
Eam1104I CTCTTC 3 cut(s) 440, 445, 469
EarI CTCTTC 3 cut(s) 440, 445, 469
Eco130I CCWWGG 2 cut(s) 308, 530
Eco147I AGGCCT 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 308, 530
ErhI CCWWGG 2 cut(s) 308, 530
Esp3I CGTCTC 1 cut(s) 529
FaiI YATR 4 cut(s) 71, 147, 192, 317
FaqI GGGAC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 2 cut(s) 272, 580
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 2 cut(s) 309, 486
GluI GCNGC 1 cut(s) 414
HaeIII GGCC 1 cut(s) 313
HapII CCGG 3 cut(s) 254, 396, 558
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 2 cut(s) 265, 278
HpaII CCGG 3 cut(s) 254, 396, 558
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 549, 584
Hpy188I TCNGA 2 cut(s) 34, 598
Hpy188III TCNNGA 2 cut(s) 221, 233
Hpy8I GTNNAC 2 cut(s) 549, 584
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 215, 538
HpyCH4V TGCA 2 cut(s) 201, 511
HpySE526I ACGT 2 cut(s) 215, 538
Kzo9I GATC 3 cut(s) 43, 223, 469
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 267, 409, 571
LweI GCATC 2 cut(s) 22, 498
MaeI CTAG 2 cut(s) 309, 486
MaeII ACGT 2 cut(s) 215, 538
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 45, 225, 471
MboI GATC 3 cut(s) 43, 223, 469
MboII GAAGA 6 cut(s) 333, 395, 457, 462, 469, 486
MflI RGATCY 1 cut(s) 223
MluCI AATT 9 cut(s) 91, 120, 184, 193, 239, 303, 325, 542, 553
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 9 cut(s) 33, 240, 250, 268, 421, 430, 460, 472, 487
MroXI GAANNNNTTC 1 cut(s) 325
MseI TTAA 4 cut(s) 90, 174, 503, 613
MspI CCGG 3 cut(s) 254, 396, 558
NdeII GATC 3 cut(s) 43, 223, 469
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 211
NspV TTCGAA 1 cut(s) 159
PceI AGGCCT 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 265, 278
PkrI GCNGC 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 90
PsiI TTATAA 1 cut(s) 192
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 223
SaqAI TTAA 4 cut(s) 90, 174, 503, 613
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 3 cut(s) 43, 223, 469
Sau96I GGNCC 1 cut(s) 245
SetI ASST 7 cut(s) 58, 218, 232, 483, 491, 541, 613
SfaNI GCATC 2 cut(s) 22, 498
SfuI TTCGAA 1 cut(s) 159
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 23, 231
SmoI CTYRAG 2 cut(s) 23, 231
Sse9I AATT 9 cut(s) 91, 120, 184, 193, 239, 303, 325, 542, 553
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 3 cut(s) 51, 330, 413
SspMI CTAG 2 cut(s) 309, 486
StuI AGGCCT 1 cut(s) 313
StyI CCWWGG 2 cut(s) 308, 530
TaiI ACGT 2 cut(s) 218, 541
TaqI TCGA 2 cut(s) 159, 472
TasI AATT 9 cut(s) 91, 120, 184, 193, 239, 303, 325, 542, 553
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 2 cut(s) 265, 278
Tru1I TTAA 4 cut(s) 90, 174, 503, 613
Tru9I TTAA 4 cut(s) 90, 174, 503, 613
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 3 cut(s) 17, 279, 437
VpaK11BI GGWCC 1 cut(s) 245
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 4 cut(s) 120, 303, 325, 553
XmaJI CCTAGG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 2 cut(s) 309, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.