RLG00000002368

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000705
Physical Location & Seq
Forward (+)
32925728 .. 32926762
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002368

Sequence Viewer

Length: 711 bp
ATGGAGAATTCTGAAAAGTCAATAAGAGGGAAAGCATTCTCCGGTCCAGAAGACGACGCACTATGCAAGGCATTTTTGTATATGGAACAAGCAAATATAAGCTTCAAAAATAAGGAGAAAATTGTGTTTGCTTATCATCATTGTTGGAGATATTTGAAAGATGCTATTACATGGAAAATTCCCGGGGGAACCAACAGCGACTCAAACAACGGTAATTCATCGTCGCAGTTTACCGAAACACAAGAAACATACATTTCACTTGATGGAGATGGAGATGGAGATGGAGATGAAGAGCCGCCGGTTAGTATTCCGGCCACTAACCCAAATCAAAGGCCCATTGGGAAAAAGGCTGCGAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCTGATATGACTCAAGAACTTCGGCGATATAACAACATCATGGAAGCTGAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACGAGTATTTCAAGAGTCCGCACGATGGGAAGAAGAAAAGGCAGATTTGGAGTATTTGAAAATAGATACCACCTATATGCCTCCAGAACAGAGAGAATTCTTCGAGCATAAGAAAACTGAGATTTATAATAAAATGAGATTCCGTGGCTCCGATTCCTCAAGCTCCGGTAACCCATCGGTAACCTCAGACTTCGATACGTCATCGGACTATCATGTTGATCCGAATCCTGCTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

27.03

Weight (kDa)

5.21

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 43 - 198 3.2e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AciI CCGC 2 cut(s) 296, 489
AclWI GGATC 1 cut(s) 683
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 3 cut(s) 7, 177, 566
AcuI CTGAAG 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 495
AgsI TTSAA 5 cut(s) 106, 157, 371, 482, 529
AluBI AGCT 5 cut(s) 102, 383, 431, 437, 633
AluI AGCT 5 cut(s) 102, 383, 431, 437, 633
AlwI GGATC 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 182
AoxI GGCC 2 cut(s) 312, 332
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 3 cut(s) 7, 177, 566
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 44, 333
AsuC2I CCSGG 2 cut(s) 183, 184
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 337
BccI CCATC 6 cut(s) 257, 263, 269, 275, 489, 652
BcnI CCSGG 2 cut(s) 183, 184
BisI GCNGC 2 cut(s) 296, 351
BlsI GCNGC 2 cut(s) 297, 352
Bme1390I CCNGG 2 cut(s) 183, 184
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 44, 333
BmiI GGNNCC 2 cut(s) 190, 619
BmrFI CCNGG 2 cut(s) 183, 184
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 381, 613
BpuMI CCSGG 2 cut(s) 183, 184
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 3 cut(s) 182, 183, 613
BsaWI WCCGGW 2 cut(s) 41, 635
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 693
BseDI CCNNGG 3 cut(s) 182, 183, 613
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 579, 669
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 314, 334
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 5 cut(s) 42, 183, 299, 311, 636
BslI CCNNNNNNNGG 1 cut(s) 495
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 314, 334
BsoBI CYCGRG 1 cut(s) 182
Bsp143I GATC 1 cut(s) 688
BspACI CCGC 2 cut(s) 296, 489
BspANI GGCC 2 cut(s) 314, 334
BspCNI CTCAG 2 cut(s) 580, 668
BspLI GGNNCC 2 cut(s) 190, 619
BspPI GGATC 1 cut(s) 683
BspQI GCTCTTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 182, 183, 613
BssMI GATC 1 cut(s) 688
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 3 cut(s) 285, 350, 366
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 588, 655
BstDSI CCRYGG 1 cut(s) 613
BstEII GGTNACC 2 cut(s) 638, 649
BstKTI GATC 1 cut(s) 691
BstMBI GATC 1 cut(s) 688
BstPI GGTNACC 2 cut(s) 638, 649
BstSCI CCNGG 2 cut(s) 181, 182
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 57
BsuRI GGCC 2 cut(s) 314, 334
BtgI CCRYGG 1 cut(s) 613
Cac8I GCNNGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 44, 333
Cfr9I CCCGGG 1 cut(s) 182
CseI GACGC 1 cut(s) 65
CviAII CATG 3 cut(s) 171, 424, 683
DdeI CTNAG 2 cut(s) 588, 655
DpnI GATC 1 cut(s) 690
DpnII GATC 1 cut(s) 688
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 3 cut(s) 285, 350, 366
EarI CTCTTC 3 cut(s) 285, 350, 366
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 182
Eco91I GGTNACC 2 cut(s) 638, 649
EcoO65I GGTNACC 2 cut(s) 638, 649
EcoRI GAATTC 2 cut(s) 7, 566
FaeI CATG 3 cut(s) 174, 427, 686
FatI CATG 3 cut(s) 170, 423, 682
FauNDI CATATG 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 296, 351
Fsp4HI GCNGC 2 cut(s) 296, 351
GluI GCNGC 2 cut(s) 296, 351
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 314, 334
HapII CCGG 5 cut(s) 42, 183, 299, 311, 636
HgaI GACGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 174, 427, 686
HindIII AAGCTT 2 cut(s) 100, 381
HinfI GANTC 6 cut(s) 200, 394, 485, 609, 623, 694
HpaII CCGG 5 cut(s) 42, 183, 299, 311, 636
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 6 cut(s) 13, 388, 622, 658, 676, 693
Hpy188III TCNNGA 4 cut(s) 47, 398, 482, 554
Hpy8I GTNNAC 1 cut(s) 231
Hpy99I CGWCG 2 cut(s) 59, 226
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 2 cut(s) 588, 655
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 3 cut(s) 174, 427, 686
Kzo9I GATC 1 cut(s) 688
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 3 cut(s) 623, 638, 706
LpnPI CCDG 7 cut(s) 55, 60, 196, 312, 324, 567, 649
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 2 cut(s) 638, 649
MalI GATC 1 cut(s) 690
MboI GATC 1 cut(s) 688
MboII GAAGA 9 cut(s) 62, 302, 367, 373, 383, 457, 512, 515, 562
MluCI AATT 5 cut(s) 7, 120, 177, 214, 566
MlyI GAGTC 3 cut(s) 194, 388, 494
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 6 cut(s) 20, 351, 367, 561, 637, 664
MroXI GAANNNNTTC 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 5 cut(s) 42, 183, 299, 311, 636
MspR9I CCNGG 2 cut(s) 183, 184
Mva1269I GAATGC 1 cut(s) 35
NciI CCSGG 2 cut(s) 183, 184
NdeI CATATG 1 cut(s) 465
NdeII GATC 1 cut(s) 688
NlaIII CATG 3 cut(s) 174, 427, 686
NlaIV GGNNCC 2 cut(s) 190, 619
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 3 cut(s) 609, 623, 694
PkrI GCNGC 2 cut(s) 297, 352
PleI GAGTC 3 cut(s) 194, 388, 493
PpsI GAGTC 3 cut(s) 194, 388, 493
PsiI TTATAA 1 cut(s) 597
PspEI GGTNACC 2 cut(s) 638, 649
PspN4I GGNNCC 2 cut(s) 190, 619
PspPI GGNCC 2 cut(s) 44, 333
RseI CAYNNNNRTG 1 cut(s) 545
SapI GCTCTTC 1 cut(s) 285
SatI GCNGC 2 cut(s) 296, 351
Sau3AI GATC 1 cut(s) 688
Sau96I GGNCC 2 cut(s) 44, 333
SchI GAGTC 3 cut(s) 194, 388, 494
ScrFI CCNGG 2 cut(s) 183, 184
SetI ASST 8 cut(s) 104, 385, 433, 439, 545, 635, 656, 671
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 396, 628
SmoI CTYRAG 2 cut(s) 396, 628
Sse9I AATT 5 cut(s) 7, 120, 177, 214, 566
SsiI CCGC 2 cut(s) 296, 489
StyD4I CCNGG 2 cut(s) 181, 182
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 671
TaqI TCGA 2 cut(s) 573, 663
TasI AATT 5 cut(s) 7, 120, 177, 214, 566
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 3 cut(s) 609, 623, 694
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 207, 303
TspGWI ACGGA 1 cut(s) 602
TspMI CCCGGG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 7, 177, 566
XmaI CCCGGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.