Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000705

Physical Location & Seq

Genomic Coordinates Reverse (-)

3096474 .. 3098893

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1042000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAAGAGATGGACTGGTTCCAGATAGAGTTTCCTAAATGTGAAGTACGCCAAGCGGAGGAATTGTATATGGAGGGCAGCTCAAAACCCTTTCAATTTCACGGTTATTGGGAAATTTGTAAAGGGTGGGTGTTATTTGAAGATTCACCTCAACATAGAGTGGATCATTTGGGAGCTGCATCCCCATCTGTAGCTATGAATGAAGATGAATCTCCTACCATTCAACAAATAAGGGTAGAAAATCCAACTCTGTCCGAAAGTTCTTTACCTAGGGCTATGGGACGAAACAAGGCCCGAAGGTTGAGGGAAAAAGGCAAGACAAATGCTGATTACGCCGCTCAACATGAAGTAGCGGCCTCATTGCGATTATTGGCGGAGCAAAATGCCCTTAAGGCGGAAGAAAGGAAGTGTAGGCATGAAAAACGGGCCAAGCAAATACAAGAAGAGATAGATGATAAGAATATGGAAATGAACACTTCGAATTATACTCCAATGAGTAAGGCCTATTTTGATAGGAAAAAAAAAAGAAATTATGAGCCGACGGCAGTTGTTTGTGACAGACTATACTCCTACGATGGTGGCTTTTCAGTCTTCCCAAATTTATCCAACTTGAGAGGCTTCTGGCTCGAAAAAGTATCCGTCCCTCAATTATCTACCATACCCCTGAAATATCTGAGGAAAATTTTTATAATCCTATGCAAGATCAGTAATAGCCTTGATCACTCGGCCTTTCCTCGGCTCACAGAGCTCACGATTGATCATTGCGATGACTTATTCCAGCTGCCTTCGTGCATTTGCGCAATGCCTTCGCTCAAGAACTTGAGCGTAACCAACTGCCTATACCAGCTCCCAGATGATTTGGGAAAGTTGCAATCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009987 GO:0010035 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0023052 GO:0042221 GO:0042742 GO:0043207 GO:0044237 GO:0044464 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0080167 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

294

Amino Acids

33.82

Weight (kDa)

7.03

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	69 - 175	7e-07	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica	MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica	Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis	pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis	RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata	RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora	Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii	Rroxscaffold_1G00024040
rosa_samantha	Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana	Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
Acc16I	TGCGCA	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	338
AciI	CCGC	5 cut(s)	56, 336, 353, 374, 395
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	3 cut(s)	114, 598, 681
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	58, 394, 735
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	95, 140, 224
AluBI	AGCT	6 cut(s)	81, 176, 194, 748, 781, 847
AluI	AGCT	6 cut(s)	81, 176, 194, 748, 781, 847
Alw21I	GWGCWC	1 cut(s)	750
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	5 cut(s)	291, 354, 426, 501, 726
ApeKI	GCWGC	3 cut(s)	78, 176, 781
ApoI	RAATTY	3 cut(s)	114, 598, 681
AspA2I	CCTAGG	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	2 cut(s)	292, 426
AsuHPI	GGTGA	1 cut(s)	138
AsuII	TTCGAA	1 cut(s)	479
AvrII	CCTAGG	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	750
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	90, 163, 768
BccI	CCATC	3 cut(s)	4, 193, 569
BceAI	ACGGC	1 cut(s)	558
BcgI	CGANNNNNNTGC	2 cut(s)	789, 823
BciVI	GTATCC	1 cut(s)	646
BclI	TGATCA	2 cut(s)	718, 757
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	189, 878
BfrI	CTTAAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	646
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	5 cut(s)	79, 177, 336, 354, 782
BlnI	CCTAGG	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	80, 178, 337, 355, 783
BmgT120I	GGNCC	2 cut(s)	292, 426
BmiI	GGNNCC	1 cut(s)	20
BmsI	GCATC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	583
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu14I	TTCGAA	1 cut(s)	479
BpuEI	CTTGAG	3 cut(s)	631, 797, 841
BsaJI	CCNNGG	2 cut(s)	269, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 394, 735
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	3 cut(s)	359, 760, 807
BseDI	CCNNGG	2 cut(s)	269, 734
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	58, 394, 735
BseMI	GCAATG	3 cut(s)	359, 760, 807
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	90, 163, 768
BshFI	GGCC	5 cut(s)	293, 356, 428, 503, 728
BsiHKAI	GWGCWC	1 cut(s)	750
BslFI	GGGAC	2 cut(s)	294, 626
BslI	CCNNNNNNNGG	3 cut(s)	58, 394, 735
BsmFI	GGGAC	2 cut(s)	294, 626
BsnI	GGCC	5 cut(s)	293, 356, 428, 503, 728
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	4 cut(s)	163, 702, 718, 757
BspACI	CCGC	5 cut(s)	56, 336, 353, 374, 395
BspANI	GGCC	5 cut(s)	293, 356, 428, 503, 728
BspCNI	CTCAG	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	3 cut(s)	359, 760, 807
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	269, 734
BssMI	GATC	4 cut(s)	163, 702, 718, 757
BssT1I	CCWWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	479
BstDEI	CTNAG	1 cut(s)	674
BstF5I	GGATG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	4 cut(s)	166, 705, 721, 760
BstMBI	GATC	4 cut(s)	163, 702, 718, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 392, 745
BstSFI	CTRYAG	2 cut(s)	189, 878
BstV1I	GCAGC	3 cut(s)	90, 163, 768
BstV2I	GAAGAC	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	5 cut(s)	293, 356, 428, 503, 728
BtgZI	GCGATG	1 cut(s)	780
BtsCI	GGATG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	2 cut(s)	292, 426
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	344, 416
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	4 cut(s)	165, 704, 720, 759
DpnII	GATC	4 cut(s)	163, 702, 718, 757
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	2 cut(s)	389, 410
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	750
Eco53kI	GAGCTC	1 cut(s)	748
EcoICRI	GAGCTC	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	2 cut(s)	347, 419
FaqI	GGGAC	2 cut(s)	294, 626
FatI	CATG	2 cut(s)	343, 415
FbaI	TGATCA	2 cut(s)	718, 757
Fnu4HI	GCNGC	5 cut(s)	79, 177, 336, 354, 782
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	5 cut(s)	79, 177, 336, 354, 782
FspBI	CTAG	1 cut(s)	270
FspI	TGCGCA	1 cut(s)	799
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	5 cut(s)	79, 177, 336, 354, 782
HaeIII	GGCC	5 cut(s)	293, 356, 428, 503, 728
HhaI	GCGC	1 cut(s)	800
Hin1II	CATG	2 cut(s)	347, 419
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HinfI	GANTC	2 cut(s)	143, 209
HphI	GGTGA	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	256, 675
Hpy188III	TCNNGA	3 cut(s)	22, 751, 814
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	3 cut(s)	291, 795, 816
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	4 cut(s)	179, 699, 792, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 392, 745
HpyF3I	CTNAG	1 cut(s)	674
Hsp92II	CATG	2 cut(s)	347, 419
HspAI	GCGC	1 cut(s)	798
Ksp22I	TGATCA	2 cut(s)	718, 757
Kzo9I	GATC	4 cut(s)	163, 702, 718, 757
LmnI	GCTCC	3 cut(s)	173, 376, 852
LpnPI	CCDG	6 cut(s)	35, 607, 677, 791, 857, 864
Lsp1109I	GCAGC	3 cut(s)	90, 163, 768
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	554, 826
MalI	GATC	4 cut(s)	165, 704, 720, 759
MbiI	CCGCTC	1 cut(s)	338
MboI	GATC	4 cut(s)	163, 702, 718, 757
MboII	GAAGA	5 cut(s)	152, 215, 410, 455, 583
MhlI	GDGCHC	1 cut(s)	750
MluCI	AATT	8 cut(s)	62, 95, 114, 481, 529, 598, 647, 681
MmeI	TCCRAC	2 cut(s)	269, 630
MnlI	CCTC	9 cut(s)	52, 67, 159, 297, 367, 608, 654, 669, 744
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	781
MspCI	CTTAAG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	332, 392, 745
NdeII	GATC	4 cut(s)	163, 702, 718, 757
NlaIII	CATG	2 cut(s)	347, 419
NlaIV	GGNNCC	1 cut(s)	20
NmeAIII	GCCGAG	2 cut(s)	704, 715
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	799
NspV	TTCGAA	1 cut(s)	479
PceI	AGGCCT	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	143, 209
PkrI	GCNGC	5 cut(s)	80, 178, 337, 355, 783
PsiI	TTATAA	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	292, 426
PvuII	CAGCTG	1 cut(s)	781
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	765
SacI	GAGCTC	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	79, 177, 336, 354, 782
Sau3AI	GATC	4 cut(s)	163, 702, 718, 757
Sau96I	GGNCC	2 cut(s)	292, 426
SduI	GDGCHC	1 cut(s)	750
SetI	ASST	9 cut(s)	83, 151, 178, 196, 271, 302, 750, 783, 849
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	2 cut(s)	189, 878
SfuI	TTCGAA	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	4 cut(s)	389, 610, 812, 820
SmoI	CTYRAG	4 cut(s)	389, 610, 812, 820
Sse9I	AATT	8 cut(s)	62, 95, 114, 481, 529, 598, 647, 681
SseBI	AGGCCT	1 cut(s)	503
SsiI	CCGC	5 cut(s)	56, 336, 353, 374, 395
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	750
StuI	AGGCCT	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	479, 627
TasI	AATT	8 cut(s)	62, 95, 114, 481, 529, 598, 647, 681
TauI	GCSGC	2 cut(s)	338, 356
TfiI	GAWTC	2 cut(s)	143, 209
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	3 cut(s)	78, 176, 781
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	7 cut(s)	17, 212, 216, 222, 360, 432, 485
TspGWI	ACGGA	1 cut(s)	628
Vha464I	CTTAAG	1 cut(s)	389
XapI	RAATTY	3 cut(s)	114, 598, 681
XmaJI	CCTAGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.