Rmu_sc0010999.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010999.1
OG0000705
Physical Location & Seq
Forward (+)
90239 .. 90784
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010999.1_g000017.1.cds

Sequence Viewer

Length: 546 bp
atgtttagggaagacatgaaaggaaaatcgttcaattttcatagctactacgatttgtgcaaagattgggtgacatttgacacaccctcacaagaacattttggtccacccctggtgcaaagaaacctcccggtgtccttagaagatgatgatgatcctgtcgatagtaattcaacaccaacttcatctagggattcgattcctaggccgatgggaagaaatgctgcaagaagaaagcaaattaaggaccacgaaaatgagaagaaagcctttgaagataagttattagctcgcatggatcgattggcggaagaggaaaaagcaataagggagaaaatgaaggaagatcgacgagagagatggtacagagaaaaagctattttaattatgcaaaccgttaattttactccaaagagcaagacttattttgatgggaaaaagagagaagcacttaaaaagctaagcgcacgggaattgtttccgaataccggcttaacattgaatgactatcatccacaaatgtcattcgatgaagacgaattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.5

Weight (kDa)

6.46

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AclWI GGATC 2 cut(s) 149, 306
AcsI RAATTY 1 cut(s) 539
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 4 cut(s) 34, 174, 275, 502
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 4 cut(s) 45, 290, 377, 460
AluI AGCT 4 cut(s) 45, 290, 377, 460
AlwI GGATC 2 cut(s) 149, 306
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 477
AspA2I CCTAGG 1 cut(s) 203
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 104, 247
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 104, 247
AvrII CCTAGG 1 cut(s) 203
BbsI GAAGAC 2 cut(s) 18, 540
BbvI GCAGC 1 cut(s) 211
BccI CCATC 3 cut(s) 205, 354, 425
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 189, 204
BisI GCNGC 1 cut(s) 225
BlnI CCTAGG 1 cut(s) 203
BlpI GCTNAGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 2 cut(s) 113, 131
Bme18I GGWCC 2 cut(s) 104, 247
BmgT120I GGNCC 2 cut(s) 104, 247
BmrFI CCNGG 2 cut(s) 113, 131
BpiI GAAGAC 2 cut(s) 18, 540
Bpu1102I GCTNAGC 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 111, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse118I RCCGGY 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 111, 203
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 488
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 301
BsiSI CCGG 2 cut(s) 131, 489
BslI CCNNNNNNNGG 1 cut(s) 488
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 154, 298, 346
Bsp1720I GCTNAGC 1 cut(s) 461
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 301
BspPI GGATC 2 cut(s) 149, 306
BsrFI RCCGGY 1 cut(s) 488
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 111, 203
BssMI GATC 3 cut(s) 154, 298, 346
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 139, 461
BstF5I GGATG 1 cut(s) 511
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 3 cut(s) 157, 301, 349
BstMBI GATC 3 cut(s) 154, 298, 346
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 111, 129
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 2 cut(s) 18, 540
Bsu15I ATCGAT 1 cut(s) 301
BsuRI GGCC 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 301
BtsCI GGATG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 104, 247
ClaI ATCGAT 1 cut(s) 301
Csp6I GTAC 1 cut(s) 364
CviAII CATG 2 cut(s) 16, 295
CviJI RGCY 7 cut(s) 45, 208, 269, 290, 377, 460, 492
CviKI_1 RGCY 7 cut(s) 45, 208, 269, 290, 377, 460, 492
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 139, 461
DpnI GATC 3 cut(s) 156, 300, 348
DpnII GATC 3 cut(s) 154, 298, 346
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 104, 247
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 19, 298
FaiI YATR 4 cut(s) 17, 42, 296, 389
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 2 cut(s) 15, 294
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 189, 204
GlaI GCGC 1 cut(s) 466
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 131, 489
HhaI GCGC 1 cut(s) 467
Hin1II CATG 2 cut(s) 19, 298
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 2 cut(s) 194, 199
HpaII CCGG 2 cut(s) 131, 489
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 483
Hpy8I GTNNAC 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 354
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4V TGCA 4 cut(s) 60, 118, 227, 391
HpyF3I CTNAG 2 cut(s) 139, 461
Hsp92II CATG 2 cut(s) 19, 298
HspAI GCGC 1 cut(s) 465
Kzo9I GATC 3 cut(s) 154, 298, 346
LpnPI CCDG 5 cut(s) 98, 125, 144, 171, 502
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 2 cut(s) 189, 204
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 156, 300, 348
MboI GATC 3 cut(s) 154, 298, 346
MboII GAAGA 9 cut(s) 23, 155, 228, 243, 274, 287, 323, 356, 545
MluCI AATT 7 cut(s) 34, 169, 240, 384, 400, 473, 539
MnlI CCTC 3 cut(s) 97, 137, 307
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 5 cut(s) 243, 383, 399, 453, 494
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 2 cut(s) 131, 489
MspR9I CCNGG 2 cut(s) 113, 131
MvaI CCWGG 1 cut(s) 113
NciI CCSGG 1 cut(s) 131
NdeII GATC 3 cut(s) 154, 298, 346
NlaIII CATG 2 cut(s) 19, 298
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 2 cut(s) 298, 534
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 194, 199
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspPI GGNCC 2 cut(s) 104, 247
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 5 cut(s) 243, 383, 399, 453, 494
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 154, 298, 346
Sau96I GGNCC 2 cut(s) 104, 247
ScrFI CCNGG 2 cut(s) 113, 131
SetI ASST 5 cut(s) 47, 129, 292, 379, 462
SinI GGWCC 2 cut(s) 104, 247
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 7 cut(s) 34, 169, 240, 384, 400, 473, 539
SsiI CCGC 1 cut(s) 308
SspMI CTAG 2 cut(s) 189, 204
StyD4I CCNGG 2 cut(s) 111, 129
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 397
TaqI TCGA 5 cut(s) 162, 197, 301, 349, 528
TasI AATT 7 cut(s) 34, 169, 240, 384, 400, 473, 539
TfiI GAWTC 2 cut(s) 194, 199
Tru1I TTAA 5 cut(s) 243, 383, 399, 453, 494
Tru9I TTAA 5 cut(s) 243, 383, 399, 453, 494
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 5 cut(s) 29, 32, 174, 353, 546
VpaK11BI GGWCC 2 cut(s) 104, 247
XapI RAATTY 1 cut(s) 539
XmaJI CCTAGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 189, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.