Rmu_sc0013558.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013558.1
OG0000705
Physical Location & Seq
Reverse (-)
53795 .. 54214
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013558.1_g000009.1.cds

Sequence Viewer

Length: 420 bp
atgcaaagaaacctcccggtgtccttggaagatgatgatgatcctgtcaatagtaattcaacaccaacttcatctagggatccgattcctaggccgatgggaagaaatgccacaagaagaaagcaaatcaaggcccaagaaaaggagaagaaaacctttgaagataagttattagctcgcatggatcgattgacggaagttaatgcaaaggcggaagaggcaaaagaaataagggagaagatgaaggaggatcgacgagagagagatagagaagaagctattttaatgatgcaacccgttaattttactccaaagagcaaggcttattttgatgggaaaaagagagaagcacttgaaaagctaagcgcacgggaattgtttccgaataccggctcaacatcgaatgactatcatccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.19

Weight (kDa)

9.12

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 5 cut(s) 35, 74, 87, 192, 258
AfiI CCNNNNNNNGG 2 cut(s) 142, 389
AgsI TTSAA 3 cut(s) 60, 161, 356
AluBI AGCT 3 cut(s) 176, 278, 361
AluI AGCT 3 cut(s) 176, 278, 361
AlwI GGATC 5 cut(s) 35, 74, 87, 192, 258
AoxI GGCC 2 cut(s) 92, 132
Asp700I GAANNNNTTC 1 cut(s) 378
AspA2I CCTAGG 1 cut(s) 89
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 89
BamHI GGATCC 1 cut(s) 79
BccI CCATC 2 cut(s) 91, 326
BcnI CCSGG 1 cut(s) 17
BfaI CTAG 2 cut(s) 75, 90
BlnI CCTAGG 1 cut(s) 89
BlpI GCTNAGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 24, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 389
Bse118I RCCGGY 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 24, 89
BseGI GGATG 1 cut(s) 412
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 142, 389
BshFI GGCC 2 cut(s) 94, 134
BshVI ATCGAT 1 cut(s) 187
BsiSI CCGG 2 cut(s) 17, 390
BslI CCNNNNNNNGG 2 cut(s) 142, 389
BsnI GGCC 2 cut(s) 94, 134
Bsp143I GATC 4 cut(s) 40, 79, 184, 250
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 1 cut(s) 212
BspANI GGCC 2 cut(s) 94, 134
BspDI ATCGAT 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 5 cut(s) 35, 74, 87, 192, 258
BsrFI RCCGGY 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 24, 89
BssMI GATC 4 cut(s) 40, 79, 184, 250
BssT1I CCWWGG 2 cut(s) 24, 89
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 362
BstF5I GGATG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 4 cut(s) 43, 82, 187, 253
BstMBI GATC 4 cut(s) 40, 79, 184, 250
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 187
BsuRI GGCC 2 cut(s) 94, 134
BsuTUI ATCGAT 1 cut(s) 187
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 187
CviAII CATG 1 cut(s) 181
CviJI RGCY 7 cut(s) 94, 134, 176, 278, 323, 361, 393
CviKI_1 RGCY 7 cut(s) 94, 134, 176, 278, 323, 361, 393
DdeI CTNAG 1 cut(s) 362
DpnI GATC 4 cut(s) 42, 81, 186, 252
DpnII GATC 4 cut(s) 40, 79, 184, 250
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 227
Eco130I CCWWGG 2 cut(s) 24, 89
EcoT14I CCWWGG 2 cut(s) 24, 89
ErhI CCWWGG 2 cut(s) 24, 89
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 182, 418
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 1 cut(s) 180
FokI GGATG 1 cut(s) 399
FspBI CTAG 2 cut(s) 75, 90
GlaI GCGC 1 cut(s) 367
HaeIII GGCC 2 cut(s) 94, 134
HapII CCGG 2 cut(s) 17, 390
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 1 cut(s) 85
HpaII CCGG 2 cut(s) 17, 390
Hpy188I TCNGA 2 cut(s) 84, 384
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 4, 206, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 4 cut(s) 40, 79, 184, 250
LpnPI CCDG 3 cut(s) 30, 57, 403
LweI GCATC 1 cut(s) 279
MaeI CTAG 2 cut(s) 75, 90
MalI GATC 4 cut(s) 42, 81, 186, 252
MboI GATC 4 cut(s) 40, 79, 184, 250
MboII GAAGA 8 cut(s) 41, 114, 129, 160, 173, 227, 250, 284
MflI RGATCY 1 cut(s) 79
MluCI AATT 3 cut(s) 55, 301, 374
MnlI CCTC 3 cut(s) 23, 211, 241
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 201, 284, 300
MspI CCGG 2 cut(s) 17, 390
MspR9I CCNGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 17
NdeII GATC 4 cut(s) 40, 79, 184, 250
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 79
SaqAI TTAA 3 cut(s) 201, 284, 300
Sau3AI GATC 4 cut(s) 40, 79, 184, 250
Sau96I GGNCC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 15, 158, 178, 280, 363
SfaNI GCATC 1 cut(s) 279
Sse9I AATT 3 cut(s) 55, 301, 374
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 75, 90
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 2 cut(s) 24, 89
TaqI TCGA 3 cut(s) 187, 253, 401
TasI AATT 3 cut(s) 55, 301, 374
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 201, 284, 300
Tru9I TTAA 3 cut(s) 201, 284, 300
TspDTI ATGAA 2 cut(s) 60, 257
TspGWI ACGGA 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 2 cut(s) 75, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.