RchiOBHm_Chr6g0298551

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000705
Physical Location & Seq
Forward (+)
59926264 .. 59927337
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26802

Sequence Viewer

Length: 819 bp
ATGGCTAGTTCGTCGAAAAGAAGTGTGAATTGGTCACCGTTGGAAGATGAAGCACTCACCGTTGCTTTCGTGAAAGTATCCCAAAATTCCGTCAATGGTACAAGTCAATCGGAAGATGGTCTTTGGATCCAAGTCCAACAAAAATTCATGGAGATCCAAAATACTATTTTGGTACAAAGGACGTGGGAGAGTTGCAAATCTCGGTGGCAAAAACACATTTTTCCTCAAATGAACAAATGGCACTCTTGCATCAAACGTGCCGAGAGGACGAACCAAAGTGGAGGCAATCTTGAAGATCAAAAACGCCAAGCGGAAGAGTATTTTCGGGACGACAATAGAGGAAAAAATTTTAATTTTCTCAATTGTTACAAATTGGCCAAAGAATGTAATTGGGCGACTTTTCAAGATACACCACAAGTTATTTACAACACACCAACATCACAACAAAATTCTTCATTCGAATTAGATGATGATGTTGAACCTATCATCACAAGTTCCACCCATTCTCCACCAACAACTTCTCCAACTGAAAATCCTAGGCCAATTGGACGAAATGCAGCAAGAAGAAGACTTGCCAAGAGAAAAGAAGCCGAAAGTAACGTTGGAGAAGAAATGGTGGCACACCTAAATCAACTAAGAGAAGATCTCCAGAAATCAAAGGAGGAAAGAGCAAGAAGAGATCGACTCAAGGAAGAGAGAAGAGAGCGTGATAGGGAAGAAGCTATTTTAGCAATGCAAACCATCAATTTTACTCCTTTGAGTAAAGAGTATTATGACGGAAAGAAAAGGGAGATAATGGAGAAAATTCGGCGCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

272

Amino Acids

31.99

Weight (kDa)

9.09

Isoelectric Point (pI)

68.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 115 - 265 4.6e-12 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 810
AciI CCGC 1 cut(s) 311
AclI AACGTT 1 cut(s) 600
AclWI GGATC 3 cut(s) 121, 134, 148
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 5 cut(s) 85, 143, 346, 448, 804
AcyI GRCGYC 1 cut(s) 811
AfaI GTAC 2 cut(s) 100, 174
AgsI TTSAA 3 cut(s) 293, 404, 479
AjiI CACGTC 1 cut(s) 183
AjuI GAANNNNNNNTTGG 4 cut(s) 13, 45, 585, 617
AluBI AGCT 1 cut(s) 722
AluI AGCT 1 cut(s) 722
AlwI GGATC 3 cut(s) 121, 134, 148
AoxI GGCC 2 cut(s) 375, 539
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 5 cut(s) 85, 143, 346, 448, 804
AspA2I CCTAGG 1 cut(s) 536
AspLEI GCGC 1 cut(s) 813
AsuHPI GGTGA 2 cut(s) 27, 49
AsuII TTCGAA 1 cut(s) 459
AvrII CCTAGG 1 cut(s) 536
BalI TGGCCA 1 cut(s) 377
BamHI GGATCC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 574
BbvI GCAGC 1 cut(s) 569
BccI CCATC 2 cut(s) 110, 749
BceAI ACGGC 1 cut(s) 798
BciVI GTATCC 1 cut(s) 88
BfaI CTAG 2 cut(s) 6, 537
BfoI RGCGCY 1 cut(s) 814
BfuI GTATCC 1 cut(s) 88
BglII AGATCT 1 cut(s) 643
BisI GCNGC 1 cut(s) 558
BlnI CCTAGG 1 cut(s) 536
BlsI GCNGC 1 cut(s) 559
BmgBI CACGTC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 128, 812
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 574
BplI GAGNNNNNCTC 4 cut(s) 630, 662, 669, 701
BpmI CTGGAG 1 cut(s) 632
Bpu14I TTCGAA 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 811
BsaJI CCNNGG 1 cut(s) 536
BsaXI ACNNNNNCTCC 4 cut(s) 490, 505, 520, 535
Bse3DI GCAATG 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 536
BseMI GCAATG 1 cut(s) 738
BseXI GCAGC 1 cut(s) 569
BshFI GGCC 2 cut(s) 377, 541
BshNI GGYRCC 1 cut(s) 810
BslFI GGGAC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 2 cut(s) 377, 541
Bsp119I TTCGAA 1 cut(s) 459
Bsp143I GATC 5 cut(s) 126, 153, 295, 643, 679
BspACI CCGC 1 cut(s) 311
BspANI GGCC 2 cut(s) 377, 541
BspLI GGNNCC 2 cut(s) 128, 812
BspPI GGATC 3 cut(s) 121, 134, 148
BspT104I TTCGAA 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 810
BsrDI GCAATG 1 cut(s) 738
BssECI CCNNGG 1 cut(s) 536
BssMI GATC 5 cut(s) 126, 153, 295, 643, 679
BssNI GRCGYC 1 cut(s) 811
BssT1I CCWWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 39, 61
Bst6I CTCTTC 4 cut(s) 309, 670, 687, 694
BstACI GRCGYC 1 cut(s) 811
BstBI TTCGAA 1 cut(s) 459
BstDEI CTNAG 1 cut(s) 635
BstEII GGTNACC 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 814
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 5 cut(s) 129, 156, 298, 646, 682
BstMBI GATC 5 cut(s) 126, 153, 295, 643, 679
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstPI GGTNACC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 3 cut(s) 126, 153, 643
BstYI RGATCY 3 cut(s) 126, 153, 643
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 377, 541
BtrI CACGTC 1 cut(s) 183
CfoI GCGC 1 cut(s) 813
Csp6I GTAC 2 cut(s) 99, 173
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 1 cut(s) 148
CviJI RGCY 5 cut(s) 5, 377, 541, 590, 722
CviKI_1 RGCY 5 cut(s) 5, 377, 541, 590, 722
CviQI GTAC 2 cut(s) 99, 173
DdeI CTNAG 1 cut(s) 635
DinI GGCGCC 1 cut(s) 812
DpnI GATC 5 cut(s) 128, 155, 297, 645, 681
DpnII GATC 5 cut(s) 126, 153, 295, 643, 679
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 4 cut(s) 309, 670, 687, 694
EarI CTCTTC 4 cut(s) 309, 670, 687, 694
Eco130I CCWWGG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 536
EgeI GGCGCC 1 cut(s) 812
EheI GGCGCC 1 cut(s) 812
ErhI CCWWGG 1 cut(s) 536
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 774
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 341
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 558
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 2 cut(s) 6, 537
GlaI GCGC 1 cut(s) 812
GluI GCNGC 1 cut(s) 558
GsuI CTGGAG 1 cut(s) 632
HaeII RGCGCY 1 cut(s) 814
HaeIII GGCC 2 cut(s) 377, 541
HhaI GCGC 1 cut(s) 813
Hin1I GRCGYC 1 cut(s) 811
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HinfI GANTC 1 cut(s) 684
HphI GGTGA 2 cut(s) 27, 49
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 5 cut(s) 70, 290, 326, 404, 649
Hpy99I CGWCG 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 39, 61
HpyCH4IV ACGT 3 cut(s) 182, 256, 600
HpyCH4V TGCA 4 cut(s) 195, 249, 557, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 1 cut(s) 635
HpySE526I ACGT 3 cut(s) 182, 256, 600
Hsp92I GRCGYC 1 cut(s) 811
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 811
KasI GGCGCC 1 cut(s) 810
Kzo9I GATC 5 cut(s) 126, 153, 295, 643, 679
LpnPI CCDG 1 cut(s) 662
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 6, 537
MaeII ACGT 3 cut(s) 182, 256, 600
MaeIII GTNAC 3 cut(s) 33, 365, 596
MalI GATC 5 cut(s) 128, 155, 297, 645, 681
MboI GATC 5 cut(s) 126, 153, 295, 643, 679
MfeI CAATTG 2 cut(s) 361, 543
MflI RGATCY 3 cut(s) 126, 153, 643
MlsI TGGCCA 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 811
MlyI GAGTC 1 cut(s) 678
MmeI TCCRAC 4 cut(s) 21, 160, 548, 583
MnlI CCTC 5 cut(s) 234, 258, 275, 332, 655
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 377
MunI CAATTG 2 cut(s) 361, 543
MwoI GCNNNNNNNGC 1 cut(s) 728
NarI GGCGCC 1 cut(s) 811
NdeII GATC 5 cut(s) 126, 153, 295, 643, 679
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 128, 812
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 33
NspV TTCGAA 1 cut(s) 459
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 1 cut(s) 678
PluTI GGCGCC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 678
Psp1406I AACGTT 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 128, 812
PsuI RGATCY 3 cut(s) 126, 153, 643
RsaI GTAC 2 cut(s) 100, 174
RsaNI GTAC 2 cut(s) 99, 173
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 5 cut(s) 126, 153, 295, 643, 679
SchI GAGTC 1 cut(s) 678
SetI ASST 6 cut(s) 185, 259, 484, 603, 627, 724
SfaNI GCATC 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 812
SfuI TTCGAA 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SsiI CCGC 1 cut(s) 311
SspDI GGCGCC 1 cut(s) 810
SspMI CTAG 2 cut(s) 6, 537
StyI CCWWGG 1 cut(s) 536
TaaI ACNGT 2 cut(s) 39, 61
TaiI ACGT 3 cut(s) 185, 259, 603
TaqI TCGA 3 cut(s) 14, 459, 682
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 4 cut(s) 63, 136, 245, 444
TspGWI ACGGA 2 cut(s) 79, 792
XapI RAATTY 5 cut(s) 85, 143, 346, 448, 804
XmaJI CCTAGG 1 cut(s) 536
XspI CTAG 2 cut(s) 6, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.