RchiOBHm_Chr4g0406761

ribosomal small subunit assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000705
Physical Location & Seq
Reverse (-)
28528464 .. 28528888
425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37804

Sequence Viewer

Length: 333 bp
ATGGCTAGTTCGTCGAAAAGAAGTGTGAATTGGTCACCGTTGGAAGATGAAGCACTCACCGTTGCTTTCGTGAAAGTATCCCAAAATTCCGTCAATGGTACAAGTCAATCGGAAGATGGTCTTTGGGTCCAAGTCCAACAAAAATTCATGGAGATCCAAAATACTATTTTGGTACAAAGGACGTGGGAGAGTTGCAAATCTTGGTGGCAAAAACACATTTTTCCTCAAATGAACAAATGGCACTCTTGCATCAAACGTGCCGAGAGGAGGAACCAAAGTGGAGGCAATCTTGAAGATCAAGTGAGCATTTTTTCAAAGAAAAATTTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000049 GO:0000184 GO:0000956 GO:0001763 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005856 GO:0005886 GO:0005903 GO:0005912 GO:0005924 GO:0005925 GO:0006139 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006611 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007044 GO:0007275 GO:0007568 GO:0007584 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0008307 GO:0008340 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009605 GO:0009653 GO:0009888 GO:0009892 GO:0009925 GO:0009933 GO:0009987 GO:0009991 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010259 GO:0010346 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016323 GO:0016324 GO:0016528 GO:0019222 GO:0019439 GO:0019538 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030016 GO:0030054 GO:0030055 GO:0030056 GO:0030312 GO:0030506 GO:0031503 GO:0031581 GO:0031667 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034329 GO:0034330 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042383 GO:0042592 GO:0042788 GO:0042886 GO:0043034 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043292 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044449 GO:0044459 GO:0044464 GO:0045047 GO:0045111 GO:0045177 GO:0045178 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0047485 GO:0048367 GO:0048471 GO:0048507 GO:0048519 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050896 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051641 GO:0051649 GO:0060255 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070161 GO:0070727 GO:0070925 GO:0070972 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071944 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090506 GO:0097064 GO:0097159 GO:0098590 GO:0098862 GO:0099080 GO:0099081 GO:0099512 GO:1900618 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032
KEGG Pathways
Metabolic & Signaling
ko03008 ko03010 map03008 map03010
Pfam Domains
Protein Families
CH Plectin S10_plectin

Protein Analysis

110

Amino Acids

12.81

Weight (kDa)

9.34

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 3 cut(s) 85, 143, 322
AfaI GTAC 2 cut(s) 100, 174
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 293, 315
AjiI CACGTC 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AlwI GGATC 1 cut(s) 148
ApoI RAATTY 3 cut(s) 85, 143, 322
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 27, 49
AvaII GGWCC 1 cut(s) 127
BccI CCATC 1 cut(s) 110
BciVI GTATCC 1 cut(s) 88
BfaI CTAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 128, 272
BmsI GCATC 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 267
Bsp143I GATC 2 cut(s) 153, 295
BspLI GGNNCC 2 cut(s) 128, 272
BspPI GGATC 1 cut(s) 148
BssMI GATC 2 cut(s) 153, 295
Bst4CI ACNGT 2 cut(s) 39, 61
BstEII GGTNACC 1 cut(s) 33
BstKTI GATC 2 cut(s) 156, 298
BstMBI GATC 2 cut(s) 153, 295
BstPI GGTNACC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuI GTATCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 99, 173
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 1 cut(s) 148
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 2 cut(s) 99, 173
DpnI GATC 2 cut(s) 155, 297
DpnII GATC 2 cut(s) 153, 295
Eco47I GGWCC 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 33
FaeI CATG 1 cut(s) 151
FaiI YATR 1 cut(s) 149
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 6
Hin1II CATG 1 cut(s) 151
HphI GGTGA 2 cut(s) 27, 49
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 70, 290
Hpy99I CGWCG 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 39, 61
HpyCH4IV ACGT 2 cut(s) 182, 256
HpyCH4V TGCA 2 cut(s) 195, 249
HpySE526I ACGT 2 cut(s) 182, 256
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 2 cut(s) 153, 295
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 182, 256
MaeIII GTNAC 1 cut(s) 33
MalI GATC 2 cut(s) 155, 297
MboI GATC 2 cut(s) 153, 295
MboII GAAGA 3 cut(s) 56, 125, 305
MflI RGATCY 1 cut(s) 153
MluCI AATT 4 cut(s) 28, 85, 143, 322
MmeI TCCRAC 2 cut(s) 21, 160
MnlI CCTC 4 cut(s) 234, 258, 261, 275
MseI TTAA 1 cut(s) 331
NdeII GATC 2 cut(s) 153, 295
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 128, 272
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 33
PspEI GGTNACC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 128, 272
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 2 cut(s) 100, 174
RsaNI GTAC 2 cut(s) 99, 173
SaqAI TTAA 1 cut(s) 331
Sau3AI GATC 2 cut(s) 153, 295
Sau96I GGNCC 1 cut(s) 127
SetI ASST 2 cut(s) 185, 259
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 127
Sse9I AATT 4 cut(s) 28, 85, 143, 322
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 39, 61
TaiI ACGT 2 cut(s) 185, 259
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 28, 85, 143, 322
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 3 cut(s) 63, 136, 245
TspGWI ACGGA 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 3 cut(s) 85, 143, 322
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.