Rw4G013350

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000705
Physical Location & Seq
Reverse (-)
31210889 .. 31211923
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013350.1

Sequence Viewer

Length: 891 bp
ATGGAGAATTCTGAAAAGTCAATAAGAGGGAAAGCATTCTCCGGTCCAGAAGATGACGCACTATGCAAGACATTTTTGTATGTAAGTCAAGATTCTGCTATTGGGACCGGGCAAACAAAGATTGTATTTTGGCGACGAATTCATGCAAAATGGGAAGAATTGTATGTTGCAGAAACAGGGCTTGACCCAAAGAGAAATCCAGGTAGCCTCCGTGTTCGATTCAAAAATAGCAAAACTCAATGTACTAAATATGCTGCAAGAATGGAACAAGCAAATATAAGCTTCAAAAATAAGGAGAAAATTGTGTTTGCTTATCATCATTGTTGGAGATATTTGAAAGATGCTATTACATGGAAAATTCCCGGGGGAACCAACAGCGACTCAAACAACGGTAATTCATCGTCACAATTTACCGAAACACAAGAAACACACATTTCACTTGATGGAGATGGAGATGGAGATGGAGATGAAGAGCCGCCGGTTAGTATTCCGGCCACTAACCCAAATCAAAGGCCCATTGGGAAAAAGGCTGCGAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCTGATATGACTCAAGAACTTCGGCGATATAACAACATCATGGAAGCTGAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACGAGTATTTCAAGAGTCCGCACGACGGGAAGAAGAAAAGGCAGATTTGGAGTATTTGAAAATAGATACCACCTATAGGCCTCCAGAACAGAGAGAATTCTTCGAGCATAAGAAAACTGAGATTTATAATAAAATGAGATTCCGTGGCTCCGATTCCTCAAGCTCCGGTAACCCATCGGTAACCGCAGACTTCGATACGTCATCGGACTATCATGTTGATCCGAATCCTGGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

296

Amino Acids

33.88

Weight (kDa)

7.07

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 103 - 258 3.6e-15 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AciI CCGC 3 cut(s) 476, 669, 834
AclWI GGATC 1 cut(s) 863
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 4 cut(s) 7, 138, 357, 746
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 675, 726, 878
AgsI TTSAA 6 cut(s) 223, 286, 337, 551, 662, 709
AjnI CCWGG 2 cut(s) 199, 877
AluBI AGCT 5 cut(s) 282, 563, 611, 617, 813
AluI AGCT 5 cut(s) 282, 563, 611, 617, 813
AlwI GGATC 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 3 cut(s) 492, 512, 728
ApeKI GCWGC 2 cut(s) 254, 530
ApoI RAATTY 4 cut(s) 7, 138, 357, 746
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 44, 105, 513, 881
AsuC2I CCSGG 3 cut(s) 109, 363, 364
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 3 cut(s) 44, 105, 881
BbvI GCAGC 2 cut(s) 241, 517
BccI CCATC 5 cut(s) 437, 443, 449, 455, 832
BciT130I CCWGG 2 cut(s) 201, 879
BcnI CCSGG 3 cut(s) 109, 363, 364
BfmI CTRYAG 1 cut(s) 724
BisI GCNGC 3 cut(s) 255, 476, 531
BlsI GCNGC 3 cut(s) 256, 477, 532
Bme1390I CCNGG 5 cut(s) 109, 201, 363, 364, 879
Bme18I GGWCC 3 cut(s) 44, 105, 881
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 4 cut(s) 44, 105, 513, 881
BmiI GGNNCC 3 cut(s) 106, 370, 799
BmrFI CCNGG 5 cut(s) 109, 201, 363, 364, 879
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 717
BpuEI CTTGAG 2 cut(s) 561, 793
BpuMI CCSGG 3 cut(s) 109, 363, 364
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 3 cut(s) 362, 363, 793
BsaWI WCCGGW 2 cut(s) 41, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 675, 726, 878
Bse118I RCCGGY 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 2 cut(s) 201, 879
BseDI CCNNGG 3 cut(s) 362, 363, 793
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 3 cut(s) 675, 726, 878
BseMII CTCAG 1 cut(s) 759
BseXI GCAGC 2 cut(s) 241, 517
BshFI GGCC 3 cut(s) 494, 514, 730
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 6 cut(s) 42, 108, 363, 479, 491, 816
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 675, 726, 878
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 3 cut(s) 494, 514, 730
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 1 cut(s) 868
BspACI CCGC 3 cut(s) 476, 669, 834
BspANI GGCC 3 cut(s) 494, 514, 730
BspCNI CTCAG 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 106, 370, 799
BspPI GGATC 1 cut(s) 863
BspQI GCTCTTC 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 3 cut(s) 362, 363, 793
BssMI GATC 1 cut(s) 868
Bst2UI CCWGG 2 cut(s) 201, 879
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 3 cut(s) 465, 530, 546
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 768
BstDSI CCRYGG 1 cut(s) 793
BstEII GGTNACC 2 cut(s) 818, 829
BstKTI GATC 1 cut(s) 871
BstMBI GATC 1 cut(s) 868
BstNI CCWGG 2 cut(s) 201, 879
BstPI GGTNACC 2 cut(s) 818, 829
BstSCI CCNGG 5 cut(s) 107, 199, 361, 362, 877
BstSFI CTRYAG 1 cut(s) 724
BstV1I GCAGC 2 cut(s) 241, 517
BsuRI GGCC 3 cut(s) 494, 514, 730
BtgI CCRYGG 1 cut(s) 793
Cac8I GCNNGC 1 cut(s) 561
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 4 cut(s) 44, 105, 513, 881
Cfr9I CCCGGG 1 cut(s) 362
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 243
CviAII CATG 4 cut(s) 143, 351, 604, 863
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 768
DpnI GATC 1 cut(s) 870
DpnII GATC 1 cut(s) 868
EaeI YGGCCR 1 cut(s) 492
Eam1104I CTCTTC 3 cut(s) 465, 530, 546
EarI CTCTTC 3 cut(s) 465, 530, 546
Eco147I AGGCCT 1 cut(s) 730
Eco47I GGWCC 3 cut(s) 44, 105, 881
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 362
Eco91I GGTNACC 2 cut(s) 818, 829
EcoO65I GGTNACC 2 cut(s) 818, 829
EcoRI GAATTC 3 cut(s) 7, 138, 746
EcoRII CCWGG 2 cut(s) 199, 877
FaeI CATG 4 cut(s) 146, 354, 607, 866
FaqI GGGAC 1 cut(s) 118
FatI CATG 4 cut(s) 142, 350, 603, 862
FauNDI CATATG 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 255, 476, 531
Fsp4HI GCNGC 3 cut(s) 255, 476, 531
GluI GCNGC 3 cut(s) 255, 476, 531
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 3 cut(s) 494, 514, 730
HapII CCGG 6 cut(s) 42, 108, 363, 479, 491, 816
HgaI GACGC 1 cut(s) 65
Hin1II CATG 4 cut(s) 146, 354, 607, 866
HindIII AAGCTT 2 cut(s) 280, 561
HinfI GANTC 8 cut(s) 92, 219, 380, 574, 665, 789, 803, 874
HpaII CCGG 6 cut(s) 42, 108, 363, 479, 491, 816
Hpy188I TCNGA 5 cut(s) 13, 568, 802, 856, 873
Hpy188III TCNNGA 5 cut(s) 47, 89, 578, 662, 734
Hpy99I CGWCG 2 cut(s) 138, 678
HpyAV CCTTC 1 cut(s) 628
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 4 cut(s) 66, 146, 170, 257
HpyF3I CTNAG 1 cut(s) 768
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 4 cut(s) 146, 354, 607, 866
Kzo9I GATC 1 cut(s) 868
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 803, 818
Lsp1109I GCAGC 2 cut(s) 241, 517
LweI GCATC 1 cut(s) 331
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 3 cut(s) 402, 818, 829
MalI GATC 1 cut(s) 870
MboI GATC 1 cut(s) 868
MluCI AATT 8 cut(s) 7, 138, 158, 300, 357, 394, 407, 746
MlyI GAGTC 3 cut(s) 374, 568, 674
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 6 cut(s) 20, 218, 531, 547, 741, 817
MroXI GAANNNNTTC 1 cut(s) 35
MspI CCGG 6 cut(s) 42, 108, 363, 479, 491, 816
MspR9I CCNGG 5 cut(s) 109, 201, 363, 364, 879
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 2 cut(s) 201, 879
NciI CCSGG 3 cut(s) 109, 363, 364
NdeI CATATG 1 cut(s) 645
NdeII GATC 1 cut(s) 868
NlaIII CATG 4 cut(s) 146, 354, 607, 866
NlaIV GGNNCC 3 cut(s) 106, 370, 799
NmuCI GTSAC 1 cut(s) 402
PceI AGGCCT 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 465
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 5 cut(s) 92, 219, 789, 803, 874
PkrI GCNGC 3 cut(s) 256, 477, 532
PleI GAGTC 3 cut(s) 374, 568, 673
PpsI GAGTC 3 cut(s) 374, 568, 673
PsiI TTATAA 1 cut(s) 777
Psp6I CCWGG 2 cut(s) 199, 877
PspEI GGTNACC 2 cut(s) 818, 829
PspGI CCWGG 2 cut(s) 199, 877
PspN4I GGNNCC 3 cut(s) 106, 370, 799
PspPI GGNCC 4 cut(s) 44, 105, 513, 881
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 465
SatI GCNGC 3 cut(s) 255, 476, 531
Sau3AI GATC 1 cut(s) 868
Sau96I GGNCC 4 cut(s) 44, 105, 513, 881
SchI GAGTC 3 cut(s) 374, 568, 674
ScrFI CCNGG 5 cut(s) 109, 201, 363, 364, 879
SetI ASST 8 cut(s) 205, 284, 565, 613, 619, 725, 815, 851
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 724
SinI GGWCC 3 cut(s) 44, 105, 881
SmaI CCCGGG 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 576, 808
SmoI CTYRAG 2 cut(s) 576, 808
Sse9I AATT 8 cut(s) 7, 138, 158, 300, 357, 394, 407, 746
SseBI AGGCCT 1 cut(s) 730
SsiI CCGC 3 cut(s) 476, 669, 834
StuI AGGCCT 1 cut(s) 730
StyD4I CCNGG 5 cut(s) 107, 199, 361, 362, 877
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 851
TaqI TCGA 3 cut(s) 217, 753, 843
TasI AATT 8 cut(s) 7, 138, 158, 300, 357, 394, 407, 746
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 5 cut(s) 92, 219, 789, 803, 874
TseFI GTSAC 1 cut(s) 402
TseI GCWGC 2 cut(s) 254, 530
Tsp45I GTSAC 1 cut(s) 402
TspDTI ATGAA 3 cut(s) 131, 387, 483
TspGWI ACGGA 2 cut(s) 200, 782
TspMI CCCGGG 1 cut(s) 362
VpaK11BI GGWCC 3 cut(s) 44, 105, 881
XapI RAATTY 4 cut(s) 7, 138, 357, 746
XmaI CCCGGG 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.