Rmu_sc0002856.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002856.1
OG0000705
Physical Location & Seq
Forward (+)
16857 .. 17871
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002856.1_g000004.1.cds

Sequence Viewer

Length: 759 bp
atggctagttcgttgaaaagaagtgtaaattggttaccgttggaaaatgatgcactcaccgttgctttcatgaaagtatctcaaaatttcgtcaatggtacaactcaatcagaagatggtctttgggtccaagtccaacaaaaattcatggagatcaaagatactattttgcaacgccaagctgaagattatttttgggacgacaatagaggaaaaaaatttaattttctcaattgttacaaattggccaaagaatgtaattggacgacttttgaagatacaccacaagttatttacaacataccaatatcacaacaaaattcttcattctcattagatgatgatgtcgaacctatcatcacaagttccacccattctccaccaacttctccaactgaaaatcctaggccaattgggcaaaatgcagcaagaagaagacttaccaagagaaaagaagccgaaagtaacgttggagaagaaatagtggcacacctaaatcaactaagagaagatcttcagaaatcaaaggaggaaaaggaaagaagagatcaactcaaggaagagagaagagaacgtgatagggaagaagctattttagcaatgcaaaccatcaattttactcctttgagtaaagagtattatgacagaaagaaaagggagataatggagaaaattcggcgccgtgaattgtttccgtcatccggttcgacgtcgaatgagtactgtctggaattgccattcaatgactcggatgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

29.6

Weight (kDa)

5.32

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 678
AclI AACGTT 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 5 cut(s) 85, 143, 218, 319, 672
AcuI CTGAAG 2 cut(s) 204, 500
AcyI GRCGYC 2 cut(s) 679, 710
AfaI GTAC 2 cut(s) 100, 722
AfiI CCNNNNNNNGG 1 cut(s) 701
AgsI TTSAA 3 cut(s) 16, 275, 742
AjuI GAANNNNNNNTTGG 4 cut(s) 13, 45, 453, 485
AluBI AGCT 2 cut(s) 182, 590
AluI AGCT 2 cut(s) 182, 590
AoxI GGCC 2 cut(s) 246, 407
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 5 cut(s) 85, 143, 218, 319, 672
Asp700I GAANNNNTTC 2 cut(s) 513, 690
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 127
AvrII CCTAGG 1 cut(s) 404
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 1 cut(s) 678
BarI GAAGNNNNNNTAC 2 cut(s) 424, 456
BbsI GAAGAC 1 cut(s) 442
BbvI GCAGC 1 cut(s) 437
BccI CCATC 2 cut(s) 110, 617
BceAI ACGGC 1 cut(s) 666
BfaI CTAG 2 cut(s) 6, 405
BfoI RGCGCY 1 cut(s) 682
BglI GCCNNNNNGGC 1 cut(s) 415
BglII AGATCT 1 cut(s) 511
BisI GCNGC 1 cut(s) 426
BlnI CCTAGG 1 cut(s) 404
BlsI GCNGC 1 cut(s) 427
BmcAI AGTACT 1 cut(s) 722
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 2 cut(s) 128, 680
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 537, 569
BpuEI CTTGAG 1 cut(s) 539
BsaHI GRCGYC 2 cut(s) 679, 710
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 701
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse3DI GCAATG 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 2 cut(s) 698, 757
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMI GCAATG 1 cut(s) 606
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 2 cut(s) 248, 409
BshNI GGYRCC 1 cut(s) 678
BsiSI CCGG 1 cut(s) 702
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 248, 409
Bsp143I GATC 3 cut(s) 153, 511, 547
BspANI GGCC 2 cut(s) 248, 409
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 128, 680
BspT107I GGYRCC 1 cut(s) 678
BsrDI GCAATG 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 3 cut(s) 153, 511, 547
BssNI GRCGYC 2 cut(s) 679, 710
BssT1I CCWWGG 1 cut(s) 404
Bst4CI ACNGT 3 cut(s) 39, 61, 725
Bst6I CTCTTC 3 cut(s) 538, 555, 562
BstACI GRCGYC 2 cut(s) 679, 710
BstDEI CTNAG 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 2 cut(s) 698, 757
BstH2I RGCGCY 1 cut(s) 682
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 3 cut(s) 156, 514, 550
BstMBI GATC 3 cut(s) 153, 511, 547
BstMWI GCNNNNNNNGC 2 cut(s) 415, 596
BstPI GGTNACC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 2 cut(s) 248, 409
BtsCI GGATG 2 cut(s) 698, 757
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 2 cut(s) 99, 721
CviAII CATG 2 cut(s) 70, 148
CviJI RGCY 6 cut(s) 5, 182, 248, 409, 458, 590
CviKI_1 RGCY 6 cut(s) 5, 182, 248, 409, 458, 590
CviQI GTAC 2 cut(s) 99, 721
DdeI CTNAG 1 cut(s) 503
DinI GGCGCC 1 cut(s) 680
DpnI GATC 3 cut(s) 155, 513, 549
DpnII GATC 3 cut(s) 153, 511, 547
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 538, 555, 562
EarI CTCTTC 3 cut(s) 538, 555, 562
Eco130I CCWWGG 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 204, 500
Eco91I GGTNACC 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 404
EgeI GGCGCC 1 cut(s) 680
EheI GGCGCC 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 73, 151
FaiI YATR 4 cut(s) 71, 149, 302, 642
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 69, 147
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 685
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 2 cut(s) 6, 405
GlaI GCGC 1 cut(s) 680
GluI GCNGC 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 682
HaeIII GGCC 2 cut(s) 248, 409
HapII CCGG 1 cut(s) 702
HhaI GCGC 1 cut(s) 681
Hin1I GRCGYC 2 cut(s) 679, 710
Hin1II CATG 2 cut(s) 73, 151
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HinfI GANTC 1 cut(s) 746
HpaII CCGG 1 cut(s) 702
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 112, 519, 751
Hpy188III TCNNGA 2 cut(s) 70, 728
Hpy99I CGWCG 2 cut(s) 712, 715
HpyCH4III ACNGT 3 cut(s) 39, 61, 725
HpyCH4IV ACGT 3 cut(s) 468, 574, 710
HpyCH4V TGCA 4 cut(s) 53, 172, 425, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 415, 596
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 3 cut(s) 468, 574, 710
Hsp92I GRCGYC 2 cut(s) 679, 710
Hsp92II CATG 2 cut(s) 73, 151
HspAI GCGC 1 cut(s) 679
KasI GGCGCC 1 cut(s) 678
Kzo9I GATC 3 cut(s) 153, 511, 547
LpnPI CCDG 2 cut(s) 713, 715
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 40
MaeI CTAG 2 cut(s) 6, 405
MaeII ACGT 3 cut(s) 468, 574, 710
MaeIII GTNAC 3 cut(s) 33, 236, 464
MalI GATC 3 cut(s) 155, 513, 549
MboI GATC 3 cut(s) 153, 511, 547
MfeI CAATTG 2 cut(s) 232, 411
MflI RGATCY 1 cut(s) 511
MlsI TGGCCA 1 cut(s) 248
MluNI TGGCCA 1 cut(s) 248
Mly113I GGCGCC 1 cut(s) 679
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 4 cut(s) 21, 160, 416, 451
MnlI CCTC 2 cut(s) 203, 523
Mox20I TGGCCA 1 cut(s) 248
MroXI GAANNNNTTC 2 cut(s) 513, 690
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 1 cut(s) 702
MunI CAATTG 2 cut(s) 232, 411
MwoI GCNNNNNNNGC 2 cut(s) 415, 596
NarI GGCGCC 1 cut(s) 679
NdeII GATC 3 cut(s) 153, 511, 547
NlaIII CATG 2 cut(s) 73, 151
NlaIV GGNNCC 2 cut(s) 128, 680
PagI TCATGA 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 513, 690
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 740
PluTI GGCGCC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 740
Psp1406I AACGTT 1 cut(s) 468
PspEI GGTNACC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 128, 680
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 100, 722
RsaNI GTAC 2 cut(s) 99, 721
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 153, 511, 547
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 722
SchI GAGTC 1 cut(s) 740
SetI ASST 7 cut(s) 184, 355, 471, 495, 577, 592, 713
SfaNI GCATC 1 cut(s) 40
SfoI GGCGCC 1 cut(s) 680
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SspDI GGCGCC 1 cut(s) 678
SspMI CTAG 2 cut(s) 6, 405
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 3 cut(s) 39, 61, 725
TaiI ACGT 3 cut(s) 471, 577, 713
TaqI TCGA 3 cut(s) 348, 707, 713
TatI WGTACW 1 cut(s) 720
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 4 cut(s) 58, 86, 136, 315
TspGWI ACGGA 1 cut(s) 684
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 5 cut(s) 85, 143, 218, 319, 672
XmaJI CCTAGG 1 cut(s) 404
XmnI GAANNNNTTC 2 cut(s) 513, 690
XspI CTAG 2 cut(s) 6, 405
ZraI GACGTC 1 cut(s) 711
ZrmI AGTACT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.