Prupe.4G233800_v2.0.a1

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
15089019 .. 15089688
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G233800.1

Sequence Viewer

Length: 582 bp
ATGGCCCCCAAACCCCAAAGAGGTGTGAATTGGAAACCACAAGAAGATGAGGCATTGTGCAAAGGGTGGGTTTTTGTCTTTGAAGATGGGTCTATTGACACGAATCAATCAAACGACTCATTTTGGTTGCGTATGTACCAAAAGTTTTTGGAAAATGATCCGGGCATGAGCGGAGCCGGGGTACGATCACCGCAAGCTATTGTTTCTCTGTTCAAGATCATCAACCAACAATGTTCTCTTTGGAAGGCATGTATAACAAAGGCTAATGCAAGGCATATGAGTGGCTCCAATCTTGAAGATGTGGATATGAATGCAAAAATACTTTTCTTGAATGATAATAAACCTCCGAATATGCCTTTCAAGTTGTATCATGCTTGGCAAATCTTAAAAGATTGCCCAAAATGGAACGACCTATGTGAATCTCCTACACAAACATTCAAAGATTCTTCTCATAGTGGCAATACAGTCAATTTGGAGGAAGATGAAGATGATGTGGTCATGCCCACTCCAAGGCCGTTGGGAAGAGATAAACAAAAGGATGAAAAAAAGAAAGGGAAAGGTGTTGAAAGTTATCTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

22.0

Weight (kDa)

5.95

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 171
AciI CCGC 2 cut(s) 171, 191
AclWI GGATC 1 cut(s) 152
AfaI GTAC 2 cut(s) 137, 183
AfiI CCNNNNNNNGG 2 cut(s) 20, 510
AgsI TTSAA 7 cut(s) 83, 214, 296, 331, 361, 439, 566
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 3, 512
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 162, 178
AsuHPI GGTGA 1 cut(s) 180
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 499
BcnI CCSGG 2 cut(s) 162, 178
Bme1390I CCNGG 2 cut(s) 162, 178
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 175, 286
BmrFI CCNGG 2 cut(s) 162, 178
BpuMI CCSGG 2 cut(s) 162, 178
BsaJI CCNNGG 2 cut(s) 177, 509
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 510
BseDI CCNNGG 2 cut(s) 177, 509
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 2 cut(s) 20, 510
BshFI GGCC 2 cut(s) 5, 514
BsiSI CCGG 2 cut(s) 161, 177
BslI CCNNNNNNNGG 2 cut(s) 20, 510
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 5, 514
Bsp143I GATC 3 cut(s) 157, 185, 216
BspACI CCGC 2 cut(s) 171, 191
BspANI GGCC 2 cut(s) 5, 514
BspLI GGNNCC 3 cut(s) 6, 175, 286
BspPI GGATC 1 cut(s) 152
BsrBI CCGCTC 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 177, 509
BssMI GATC 3 cut(s) 157, 185, 216
BssT1I CCWWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 195
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 3 cut(s) 160, 188, 219
BstMBI GATC 3 cut(s) 157, 185, 216
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 160, 176
BsuRI GGCC 2 cut(s) 5, 514
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 136, 182
CviAII CATG 4 cut(s) 166, 249, 371, 499
CviJI RGCY 6 cut(s) 5, 176, 197, 263, 285, 514
CviKI_1 RGCY 6 cut(s) 5, 176, 197, 263, 285, 514
CviQI GTAC 2 cut(s) 136, 182
DpnI GATC 3 cut(s) 159, 187, 218
DpnII GATC 3 cut(s) 157, 185, 216
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 4 cut(s) 169, 252, 374, 502
FatI CATG 4 cut(s) 165, 248, 370, 498
FauNDI CATATG 1 cut(s) 276
FokI GGATG 1 cut(s) 551
HaeIII GGCC 2 cut(s) 5, 514
HapII CCGG 2 cut(s) 161, 177
Hin1II CATG 4 cut(s) 169, 252, 374, 502
HinfI GANTC 4 cut(s) 103, 116, 419, 443
HpaII CCGG 2 cut(s) 161, 177
HphI GGTGA 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 3 cut(s) 214, 293, 328
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 60, 269, 314
Hsp92II CATG 4 cut(s) 169, 252, 374, 502
Kzo9I GATC 3 cut(s) 157, 185, 216
LmnI GCTCC 2 cut(s) 173, 290
LpnPI CCDG 2 cut(s) 174, 190
MalI GATC 3 cut(s) 159, 187, 218
MbiI CCGCTC 1 cut(s) 171
MboI GATC 3 cut(s) 157, 185, 216
MboII GAAGA 7 cut(s) 56, 95, 308, 438, 491, 497, 534
MluCI AATT 2 cut(s) 28, 469
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 4 cut(s) 14, 43, 354, 469
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 161, 177
MspR9I CCNGG 2 cut(s) 162, 178
Mva1269I GAATGC 1 cut(s) 316
NciI CCSGG 2 cut(s) 162, 178
NdeI CATATG 1 cut(s) 276
NdeII GATC 3 cut(s) 157, 185, 216
NlaIII CATG 4 cut(s) 169, 252, 374, 502
NlaIV GGNNCC 3 cut(s) 6, 175, 286
NspI RCATGY 1 cut(s) 252
PctI GAATGC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 103, 419, 443
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 6, 175, 286
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 137, 183
RsaNI GTAC 2 cut(s) 136, 182
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 386
Sau3AI GATC 3 cut(s) 157, 185, 216
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 162, 178
SetI ASST 5 cut(s) 25, 199, 346, 414, 562
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 28, 469
SsiI CCGC 2 cut(s) 171, 191
StyD4I CCNGG 2 cut(s) 160, 176
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 1 cut(s) 466
TasI AATT 2 cut(s) 28, 469
TfiI GAWTC 3 cut(s) 103, 419, 443
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 323, 498, 555
XceI RCATGY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.