RLG00000012994

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000705
Physical Location & Seq
Reverse (-)
24706094 .. 24708644
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012994

Sequence Viewer

Length: 675 bp
ATGGTGGTGCTTGGGGACTACGATAAGCTCGACGATGTTCAAGAGATGGAACAAGCAAATATAAGCTTCAAAAATAAGGAGAAAATTGTGTTTGCTTATCATCATTGTGGGAGATATTTGAAAGATGCTATTACATGGAAAATTCTTGGGGGAACCAACAGCGACTCAAACAACGGTAATTCATCGTCGCAGTTTACCGAAACACAAGAAACACACATTTCACTTGATGGAGATGGAGATGGAGATGGAGATGAAGAGCCGCCGGTTAGTATTCCGGCCACTAACCCAAATCAAAGGCCCATTGGGAAAAAGGCTGCGAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCTGATATGACTCAAGAACTTCGGCGATATAACAACATCATGGGAGCTGAAGCTATTAGGAAGAAAGAGAAGGACAAACATATGCTACGAGTATTTCAAGAGTCCGCACGACGGGAAGAAGAAAAGGCAGATTTGGAGTATTTGAAAATAGATACCACCTATATGCCTCCAGAACAGAGAGAATTCTTCGAGCATAAGAAAACTGAGATTTATAATAAAATGAGATTCCGTGGCTCCAATTCCTCAAGCTCCGGTAACCCATCGGTAACCTCAGACTTCGATACGTCATCGGACTATCATGTTGATCCGAATCCTGGTCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.51

Weight (kDa)

5.26

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 31 - 186 2.2e-13 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AciI CCGC 2 cut(s) 260, 453
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 2 cut(s) 141, 530
AcuI CTGAAG 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 459, 662
AgsI TTSAA 6 cut(s) 41, 70, 121, 335, 446, 493
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 6 cut(s) 28, 66, 347, 395, 401, 597
AluI AGCT 6 cut(s) 28, 66, 347, 395, 401, 597
AlwI GGATC 1 cut(s) 647
AoxI GGCC 2 cut(s) 276, 296
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 2 cut(s) 141, 530
AspS9I GGNCC 2 cut(s) 297, 665
AvaII GGWCC 1 cut(s) 665
BbvI GCAGC 1 cut(s) 301
BccI CCATC 6 cut(s) 40, 221, 227, 233, 239, 616
BciT130I CCWGG 1 cut(s) 663
BisI GCNGC 2 cut(s) 260, 315
BlsI GCNGC 2 cut(s) 261, 316
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 2 cut(s) 297, 665
BmiI GGNNCC 2 cut(s) 154, 583
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 345, 577
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 1 cut(s) 577
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 662
Bse118I RCCGGY 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 2 cut(s) 459, 662
BseMII CTCAG 2 cut(s) 543, 633
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 2 cut(s) 278, 298
BsiSI CCGG 3 cut(s) 263, 275, 600
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 459, 662
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 278, 298
Bsp143I GATC 1 cut(s) 652
BspACI CCGC 2 cut(s) 260, 453
BspANI GGCC 2 cut(s) 278, 298
BspCNI CTCAG 2 cut(s) 544, 632
BspLI GGNNCC 2 cut(s) 154, 583
BspPI GGATC 1 cut(s) 647
BspQI GCTCTTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 1 cut(s) 652
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 3 cut(s) 249, 314, 330
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 552, 619
BstDSI CCRYGG 1 cut(s) 577
BstEII GGTNACC 2 cut(s) 602, 613
BstKTI GATC 1 cut(s) 655
BstMBI GATC 1 cut(s) 652
BstNI CCWGG 1 cut(s) 663
BstPI GGTNACC 2 cut(s) 602, 613
BstSCI CCNGG 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 278, 298
BtgI CCRYGG 1 cut(s) 577
Cac8I GCNNGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 297, 665
CviAII CATG 3 cut(s) 135, 388, 647
DdeI CTNAG 2 cut(s) 552, 619
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 3 cut(s) 249, 314, 330
EarI CTCTTC 3 cut(s) 249, 314, 330
Eco47I GGWCC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 2 cut(s) 602, 613
EcoO65I GGTNACC 2 cut(s) 602, 613
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 661
FaeI CATG 3 cut(s) 138, 391, 650
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 134, 387, 646
FauNDI CATATG 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 260, 315
Fsp4HI GCNGC 2 cut(s) 260, 315
GluI GCNGC 2 cut(s) 260, 315
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 2 cut(s) 278, 298
HapII CCGG 3 cut(s) 263, 275, 600
Hin1II CATG 3 cut(s) 138, 391, 650
HindIII AAGCTT 2 cut(s) 64, 345
HinfI GANTC 5 cut(s) 164, 358, 449, 573, 658
HpaII CCGG 3 cut(s) 263, 275, 600
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 4 cut(s) 352, 622, 640, 657
Hpy188III TCNNGA 4 cut(s) 41, 362, 446, 518
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 3 cut(s) 35, 190, 462
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 632
HpyF3I CTNAG 2 cut(s) 552, 619
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 3 cut(s) 138, 391, 650
Kzo9I GATC 1 cut(s) 652
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 3 cut(s) 392, 587, 602
LpnPI CCDG 5 cut(s) 276, 288, 531, 613, 648
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 2 cut(s) 602, 613
MalI GATC 1 cut(s) 654
MboI GATC 1 cut(s) 652
MboII GAAGA 8 cut(s) 266, 331, 337, 347, 421, 476, 479, 526
MluCI AATT 5 cut(s) 84, 141, 178, 530, 586
MlyI GAGTC 3 cut(s) 158, 352, 458
MnlI CCTC 5 cut(s) 315, 331, 525, 601, 628
MslI CAYNNNNRTG 2 cut(s) 105, 509
MspI CCGG 3 cut(s) 263, 275, 600
MspR9I CCNGG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 663
NdeI CATATG 1 cut(s) 429
NdeII GATC 1 cut(s) 652
NlaIII CATG 3 cut(s) 138, 391, 650
NlaIV GGNNCC 2 cut(s) 154, 583
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 2 cut(s) 573, 658
PkrI GCNGC 2 cut(s) 261, 316
PleI GAGTC 3 cut(s) 158, 352, 457
PpsI GAGTC 3 cut(s) 158, 352, 457
PsiI TTATAA 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 661
PspEI GGTNACC 2 cut(s) 602, 613
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 2 cut(s) 154, 583
PspPI GGNCC 2 cut(s) 297, 665
RseI CAYNNNNRTG 2 cut(s) 105, 509
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 2 cut(s) 260, 315
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 2 cut(s) 297, 665
SchI GAGTC 3 cut(s) 158, 352, 458
ScrFI CCNGG 1 cut(s) 663
SetI ASST 9 cut(s) 30, 68, 349, 397, 403, 509, 599, 620, 635
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 2 cut(s) 105, 509
SmlI CTYRAG 2 cut(s) 360, 592
SmoI CTYRAG 2 cut(s) 360, 592
Sse9I AATT 5 cut(s) 84, 141, 178, 530, 586
SsiI CCGC 2 cut(s) 260, 453
StyD4I CCNGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 635
TaqI TCGA 3 cut(s) 30, 537, 627
TasI AATT 5 cut(s) 84, 141, 178, 530, 586
TauI GCSGC 1 cut(s) 262
TfiI GAWTC 2 cut(s) 573, 658
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 171, 267
TspGWI ACGGA 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 665
XapI RAATTY 2 cut(s) 141, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.