pycom14g03000

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
2330448 .. 2330913
466 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03000.1

Sequence Viewer

Length: 372 bp
ATGGCCTCATCTGCAATGAAAGGTAGGGCTTGGACCCGAAAAGAAGATGAAACTCTTTGCAGGGCTTATAGATGGGTCTCGGAAAATAGTGTGAGGGGGAGTTCTCAAACAAGTGAAGGTGTTTGGACTCATGTGTCCAAAAAATACTATAAGTTCTACGAATGCACCACTCCACCAAATACCCGAAACCACGAGAGTTGTTCTTCAAGATGGAAGAAACACGTTCATCCAAGTTTGAATAAATGGCATCAAGCACTGTTAGTAGCCGCAAGTAGACATGAAAGCGGCTCCAATTACTACAACGAAGTACGCCAAGCGGAGGAATTGTATATGGATGGCAGCTCGAAACCCTTTCAGTTTCACGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.32

Weight (kDa)

9.25

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 274
AciI CCGC 3 cut(s) 267, 285, 317
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 2 cut(s) 207, 238
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 33
AvaII GGWCC 1 cut(s) 33
BauI CACGAG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 351
BccI CCATC 3 cut(s) 66, 204, 329
BcoDI GTCTC 1 cut(s) 82
BisI GCNGC 3 cut(s) 267, 286, 340
BlsI GCNGC 3 cut(s) 268, 287, 341
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 35, 289
BmsI GCATC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 21
BseGI GGATG 2 cut(s) 226, 340
BseLI CCNNNNNNNGG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 351
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 82
BspACI CCGC 3 cut(s) 267, 285, 317
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 35, 289
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 21
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 258, 365
BstF5I GGATG 2 cut(s) 226, 340
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 226, 340
BtsIMutI CAGTG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 2 cut(s) 131, 278
CviJI RGCY 6 cut(s) 5, 29, 65, 266, 288, 342
CviKI_1 RGCY 6 cut(s) 5, 29, 65, 266, 288, 342
CviQI GTAC 1 cut(s) 308
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 33
FaeI CATG 2 cut(s) 134, 281
FaiI YATR 6 cut(s) 69, 132, 150, 279, 330, 332
FatI CATG 2 cut(s) 130, 277
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 267, 286, 340
FokI GGATG 2 cut(s) 213, 347
Fsp4HI GCNGC 3 cut(s) 267, 286, 340
GluI GCNGC 3 cut(s) 267, 286, 340
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 134, 281
HinfI GANTC 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 258, 365
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 14, 60, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 134, 281
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 1 cut(s) 46
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 222
MboII GAAGA 3 cut(s) 56, 195, 226
MluCI AATT 2 cut(s) 292, 323
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 3 cut(s) 16, 87, 313
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 134, 281
NlaIV GGNNCC 2 cut(s) 35, 289
PctI GAATGC 1 cut(s) 167
PkrI GCNGC 3 cut(s) 268, 287, 341
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 35, 289
PspPI GGNCC 1 cut(s) 33
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SatI GCNGC 3 cut(s) 267, 286, 340
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 121
SetI ASST 4 cut(s) 25, 121, 225, 344
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 33
Sse9I AATT 2 cut(s) 292, 323
SsiI CCGC 3 cut(s) 267, 285, 317
TaaI ACNGT 2 cut(s) 258, 365
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 344
TasI AATT 2 cut(s) 292, 323
TauI GCSGC 2 cut(s) 269, 288
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 4 cut(s) 32, 63, 215, 294
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.