RLG00000002250

regulation of endocannabinoid signaling pathway

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
30582087 .. 30582809
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002250

Sequence Viewer

Length: 630 bp
ATGGAGAATTCTGAAAAGCCAATAAGAGGGAAAGCATTCTCCAATCCAGAAGACAACACCCTATGCAAGGCATTTTTGTATGTAAGTCAAGATTCTGCTATTGGGACCGGGCAAACAAAGATTGTATTTTGGCAACGAATTCATGCAAAATGGGAAGAATTGTATGTTGCAGAAACAGGGCTTGCCCCAAAGAGAAATCCAAGTAGCCTCCATGCTCAATTCAAAACTATCAAAACTGAATGTACTAAATATCCTGCAAGAGTGACAGAGACAAAACGAAGACGGATTAGTGGTTTTAGTGAAGCCGACATTATGGAACAAGCAAATATAAGCTTCAAAAATAAGGAGAAAACTGTGTTTGCTTATCATCATTGTTGGAGATATTTGAAAGATGCTATTACATGGAAAATTCCTGGCGGAACCAACAGCGACTCAAACAACGGTAATTCATTGTCACAGTTTATCAAAACACAAGAAACACACACTTCACTTGATGGAGATGGAGATGAAGAGTCGCTGGTTAGTATTCTGGCCACTAACCCTAATCAAAGGCCCATCAGGAAAAATGCTGTGAAGAGGAAGATTATTGAAGAGGGGCAAGCTTCCAATATGGCTCAAGAACTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.75

Weight (kDa)

9.05

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 3 cut(s) 7, 138, 408
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 26, 67
AgsI TTSAA 4 cut(s) 223, 337, 388, 590
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 2 cut(s) 333, 602
AluI AGCT 2 cut(s) 333, 602
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 2 cut(s) 531, 551
ApoI RAATTY 3 cut(s) 7, 138, 408
Asp700I GAANNNNTTC 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 105, 552
AsuC2I CCSGG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 105
BalI TGGCCA 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 57, 286
BccI CCATC 3 cut(s) 488, 494, 563
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 263
Bme1390I CCNGG 2 cut(s) 109, 414
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 105, 552
BmiI GGNNCC 2 cut(s) 106, 421
BmrFI CCNGG 2 cut(s) 109, 414
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 57, 286
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 67
BseBI CCWGG 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 26, 67
BshFI GGCC 2 cut(s) 533, 553
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 26, 67
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 2 cut(s) 533, 553
BspACI CCGC 1 cut(s) 417
BspANI GGCC 2 cut(s) 533, 553
BspLI GGNNCC 2 cut(s) 106, 421
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 355, 443, 459
Bst6I CTCTTC 3 cut(s) 504, 569, 585
BstC8I GCNNGC 2 cut(s) 183, 600
BstENI CCTNNNNNAGG 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 107, 412
BstV2I GAAGAC 2 cut(s) 57, 286
BsuRI GGCC 2 cut(s) 533, 553
Cac8I GCNNGC 2 cut(s) 183, 600
Cfr13I GGNCC 2 cut(s) 105, 552
Csp6I GTAC 1 cut(s) 243
CviAII CATG 3 cut(s) 143, 212, 402
CviJI RGCY 9 cut(s) 19, 181, 207, 305, 333, 533, 553, 602, 614
CviKI_1 RGCY 9 cut(s) 19, 181, 207, 305, 333, 533, 553, 602, 614
CviQI GTAC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 3 cut(s) 504, 569, 585
EarI CTCTTC 3 cut(s) 504, 569, 585
EciI GGCGGA 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoRI GAATTC 2 cut(s) 7, 138
EcoRII CCWGG 1 cut(s) 412
FaeI CATG 3 cut(s) 146, 215, 405
FaiI YATR 9 cut(s) 64, 81, 144, 165, 213, 314, 329, 403, 611
FaqI GGGAC 1 cut(s) 118
FatI CATG 3 cut(s) 142, 211, 401
HaeIII GGCC 2 cut(s) 533, 553
HapII CCGG 1 cut(s) 108
Hin1II CATG 3 cut(s) 146, 215, 405
HindIII AAGCTT 2 cut(s) 331, 600
HinfI GANTC 3 cut(s) 92, 431, 512
HpaII CCGG 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 4 cut(s) 47, 89, 559, 617
HpyCH4III ACNGT 3 cut(s) 355, 443, 459
HpyCH4V TGCA 4 cut(s) 66, 146, 170, 257
Hsp92II CATG 3 cut(s) 146, 215, 405
LpnPI CCDG 9 cut(s) 60, 121, 162, 267, 399, 426, 503, 515, 544
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 262, 453
MboII GAAGA 7 cut(s) 62, 167, 291, 521, 586, 592, 602
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 6 cut(s) 7, 138, 158, 218, 408, 445
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 2 cut(s) 425, 521
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 4 cut(s) 20, 218, 570, 586
Mox20I TGGCCA 1 cut(s) 533
MroXI GAANNNNTTC 1 cut(s) 35
MscI TGGCCA 1 cut(s) 533
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 109, 414
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 1 cut(s) 414
NciI CCSGG 1 cut(s) 109
NlaIII CATG 3 cut(s) 146, 215, 405
NlaIV GGNNCC 2 cut(s) 106, 421
NmuCI GTSAC 2 cut(s) 262, 453
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 92
PleI GAGTC 2 cut(s) 425, 520
PpsI GAGTC 2 cut(s) 425, 520
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 106, 421
PspPI GGNCC 2 cut(s) 105, 552
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 105, 552
SchI GAGTC 2 cut(s) 425, 521
ScrFI CCNGG 2 cut(s) 109, 414
SetI ASST 2 cut(s) 335, 604
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
Sse9I AATT 6 cut(s) 7, 138, 158, 218, 408, 445
SsiI CCGC 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 107, 412
TaaI ACNGT 3 cut(s) 355, 443, 459
TasI AATT 6 cut(s) 7, 138, 158, 218, 408, 445
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 2 cut(s) 262, 453
Tsp45I GTSAC 2 cut(s) 262, 453
TspDTI ATGAA 3 cut(s) 131, 438, 522
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 105
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 3 cut(s) 7, 138, 408
XmnI GAANNNNTTC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.