Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000705

Physical Location & Seq

Genomic Coordinates Forward (+)

68707955 .. 68708881

Gene Structure 927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGAAGGGTACCAACCAATCAAAGGAAGGGCTTTGGTCACAAATCCAACAAACATACTTGGAATCGGAAGAGAGTTGTAATTCTCGATGGAAAAAACATATATTTCCAAACATGAACAAATGGCACCAATGTCTCAAGCGTTCCGAAAGGAGGGATCAAAGCGGAGCTAATCTCCAAGATATACAACGGCAAGCCGAGAGTTTTTATAGGGACGACTCCAGAGGACAACCATTTAAGTTTGGTAATTGTTATAATTTGTGCAAAGATTGGGTGGCGTATCAAGATCCACCTCAAGAACAATTTGGTCCAACACCAGTTCAACGAAACACCTCAATTTCTTTGGAGGAGGATGTGGATCCCATTGAGGATTCTCCTACTTCATCTCAAACGCAAATTCCTAGGCCTATGGGAAGATATGCTGCAAGAAAAACAAGGCAAAAGGGCAAAGAGGCGGAAGTCAAAGCCATTGGAGAAGAAATGGTTCCCGGAATGAGAGAAATGGAGGCACAAATGAAAGAGGCAGAAGAGGAAAGGAAGAGAAGAGAGAAGAAAAGGGAGGATCGAAGAGAGGTTGCTAGGTTAGAGGCTATTTTAATGATGCAAACCATTGATTTTACTCCAAGGAGTAAACAGTATTTTGATGGGAAGAAAAGAGAAGCTCTCCACAAACTAAGAGGACGTGAATTGTTTCCAAATTCCAGCGAGACATCCGATGTCTATCATCCACAAATGCCATCCGATGAAGATGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

252

Amino Acids

29.67

Weight (kDa)

6.49

Isoelectric Point (pI)

73.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	78 - 220	2.6e-06	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica	MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica	Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis	pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis	RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata	RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora	Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii	Rroxscaffold_1G00024040
rosa_samantha	Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana	Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	2 cut(s)	11, 126
AciI	CCGC	2 cut(s)	165, 455
AclWI	GGATC	5 cut(s)	165, 281, 353, 366, 570
AcsI	RAATTY	2 cut(s)	396, 697
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	25, 153
AgsI	TTSAA	1 cut(s)	323
AjiI	CACGTC	1 cut(s)	683
AluBI	AGCT	3 cut(s)	170, 662, 755
AluI	AGCT	3 cut(s)	170, 662, 755
Alw26I	GTCTC	2 cut(s)	140, 701
AlwI	GGATC	5 cut(s)	165, 281, 353, 366, 570
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	2 cut(s)	396, 697
Asp700I	GAANNNNTTC	2 cut(s)	483, 690
Asp718I	GGTACC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	308
AvrII	CCTAGG	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	11, 126
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	84, 638, 745
BceAI	ACGGC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	140, 701
BfaI	CTAG	2 cut(s)	402, 579
BisI	GCNGC	1 cut(s)	423
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	13, 128, 360, 486
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	591
BplI	GAGNNNNNCTC	4 cut(s)	159, 191, 648, 680
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	2 cut(s)	122, 279
BpuMI	CCSGG	1 cut(s)	489
BsaBI	GATNNNNATC	2 cut(s)	357, 720
BsaJI	CCNNGG	2 cut(s)	401, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 153
Bse1I	ACTGG	1 cut(s)	317
Bse8I	GATNNNNATC	2 cut(s)	357, 720
BseDI	CCNNGG	2 cut(s)	401, 623
BseGI	GGATG	4 cut(s)	358, 710, 724, 737
BseJI	GATNNNNATC	2 cut(s)	357, 720
BseLI	CCNNNNNNNGG	2 cut(s)	25, 153
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	406
BshNI	GGYRCC	2 cut(s)	11, 126
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	25, 153
BsmAI	GTCTC	2 cut(s)	140, 701
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	406
Bsp143I	GATC	4 cut(s)	157, 286, 358, 562
BspACI	CCGC	2 cut(s)	165, 455
BspANI	GGCC	1 cut(s)	406
BspLI	GGNNCC	4 cut(s)	13, 128, 360, 486
BspPI	GGATC	5 cut(s)	165, 281, 353, 366, 570
BspT107I	GGYRCC	2 cut(s)	11, 126
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	401, 623
BssMI	GATC	4 cut(s)	157, 286, 358, 562
BssT1I	CCWWGG	2 cut(s)	401, 623
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	5 cut(s)	66, 522, 533, 538, 562
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	674
BstF5I	GGATG	4 cut(s)	358, 710, 724, 737
BstKTI	GATC	4 cut(s)	160, 289, 361, 565
BstMAI	GTCTC	2 cut(s)	140, 701
BstMBI	GATC	4 cut(s)	157, 286, 358, 562
BstSCI	CCNGG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	286, 358
BstYI	RGATCY	2 cut(s)	286, 358
BsuRI	GGCC	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	683
BtsCI	GGATG	4 cut(s)	358, 710, 724, 737
Cac8I	GCNNGC	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	8 cut(s)	34, 170, 197, 406, 467, 590, 662, 755
CviKI_1	RGCY	8 cut(s)	34, 170, 197, 406, 467, 590, 662, 755
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	4 cut(s)	159, 288, 360, 564
DpnII	GATC	4 cut(s)	157, 286, 358, 562
Eam1104I	CTCTTC	5 cut(s)	66, 522, 533, 538, 562
EarI	CTCTTC	5 cut(s)	66, 522, 533, 538, 562
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	401, 623
Eco147I	AGGCCT	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	401, 623
ErhI	CCWWGG	2 cut(s)	401, 623
FaeI	CATG	1 cut(s)	118
FaiI	YATR	9 cut(s)	58, 102, 104, 116, 185, 210, 255, 410, 420
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	4 cut(s)	365, 697, 711, 724
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	402, 579
GluI	GCNGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	3 cut(s)	65, 218, 371
HpaII	CCGG	1 cut(s)	489
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	4 cut(s)	70, 148, 715, 742
Hpy188III	TCNNGA	4 cut(s)	87, 222, 284, 296
Hpy8I	GTNNAC	1 cut(s)	632
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	3 cut(s)	264, 425, 604
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	157, 286, 358, 562
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	4 cut(s)	235, 330, 502, 715
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	2 cut(s)	402, 579
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	4 cut(s)	159, 288, 360, 564
MboI	GATC	4 cut(s)	157, 286, 358, 562
MflI	RGATCY	2 cut(s)	286, 358
MluCI	AATT	8 cut(s)	82, 247, 256, 302, 336, 396, 686, 697
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	73, 335
MroXI	GAANNNNTTC	2 cut(s)	483, 690
MseI	TTAA	3 cut(s)	237, 596, 757
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	489
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	4 cut(s)	157, 286, 358, 562
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	4 cut(s)	13, 128, 360, 486
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	406
PdmI	GAANNNNTTC	2 cut(s)	483, 690
PfeI	GAWTC	2 cut(s)	65, 371
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	255
PspN4I	GGNNCC	4 cut(s)	13, 128, 360, 486
PspPI	GGNCC	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	286, 358
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	237, 596, 757
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	4 cut(s)	157, 286, 358, 562
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	489
SetI	ASST	8 cut(s)	172, 295, 335, 576, 584, 664, 685, 757
SfaNI	GCATC	1 cut(s)	591
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	137, 294
SmoI	CTYRAG	2 cut(s)	137, 294
Sse9I	AATT	8 cut(s)	82, 247, 256, 302, 336, 396, 686, 697
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	2 cut(s)	165, 455
SspMI	CTAG	2 cut(s)	402, 579
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	2 cut(s)	401, 623
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	2 cut(s)	88, 565
TasI	AATT	8 cut(s)	82, 247, 256, 302, 336, 396, 686, 697
TfiI	GAWTC	2 cut(s)	65, 371
Tru1I	TTAA	3 cut(s)	237, 596, 757
Tru9I	TTAA	3 cut(s)	237, 596, 757
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	4 cut(s)	131, 372, 530, 759
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	396, 697
XmaJI	CCTAGG	1 cut(s)	401
XmnI	GAANNNNTTC	2 cut(s)	483, 690
XspI	CTAG	2 cut(s)	402, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.