Prupe.3G094000_v2.0.a1

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000705
Physical Location & Seq
Reverse (-)
7043828 .. 7046789
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G094000.1

Sequence Viewer

Length: 858 bp
ATGAAAAGGGGAAAATCATTCACATTGGAACAAGATGTGGCTATTTGCAATGCTCGGTTAAATATCTTCCAAGATCCGTTCAATGTTGTTTCAAAACCGCAATATAATTTCTGGGATCGAATATACCAAAATTATGTTGAGTTAACTGGTGATCAAAATGTACGATCCCAATGTTCAGTTCAGTCTAGGTGGAAATTAATCTTCGGGAGTTGCAAAAAAATTCATGATTGTCTTGCTCGAGTAGAAGATAAACAAAGTGGATTGACGGAATCTAACAAGGTTCTTCGAGCAAATATGCTGTACTTTGAGCATGAGAAGAAACGTTTTGCATTCAATCATTGTTGGGAAATTTTGCAACATAAGATGAAAGATTTGGTACCAGCTAAGAGTCCTGATCCTCGTACTAAGGATAGAGACCCCAACATCCATTCCTCATTCTCCTCGCATCCTCCAGACCCTAACACACTTGTTTCACCTGAATCTGACAAAGATTCATATTATATAATGGAATCTCGAAAAAGCAAAAGGCCTACAAGAAGAAGAGCTGAAAAAGAAGCACACAGGAGGAGCAAGGTAGTCAATACTTTGGATTCTCGCATTTGCGACTTGATGGAGCAATTTACAAAACAATTGGCAGAGAGTGACAAAAGAAAGGCAGAAGTTGCAGAAAGAAAGGTAAAGGTCATGGAGGAAATGAATGAAAGGCAGCAAAGAGAGCAAGATGACCGCATTATGAGTATGGACACTTCAAACATGGGACCACGCGCAAGAGCTTACTATGAGCACAGAAAGAGTGATATTTATTTCAAAACCATGGGGCACACTGCAGACAAGTCCAATATGGAGGACAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

286

Amino Acids

33.68

Weight (kDa)

9.29

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 376
AccII CGCG 1 cut(s) 765
AciI CCGC 2 cut(s) 98, 727
AclI AACGTT 1 cut(s) 322
AclWI GGATC 4 cut(s) 68, 123, 159, 389
AcsI RAATTY 2 cut(s) 219, 348
AfaI GTAC 4 cut(s) 162, 302, 378, 403
AgsI TTSAA 5 cut(s) 82, 93, 334, 750, 808
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 4 cut(s) 383, 545, 773, 855
AluI AGCT 4 cut(s) 383, 545, 773, 855
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 4 cut(s) 68, 123, 159, 389
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 706
ApoI RAATTY 2 cut(s) 219, 348
AseI ATTAAT 1 cut(s) 197
Asp718I GGTACC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 2 cut(s) 161, 465
AvaI CYCGRG 1 cut(s) 237
AvaII GGWCC 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 822
BanI GGYRCC 1 cut(s) 376
BarI GAAGNNNNNNTAC 2 cut(s) 730, 762
Bbv12I GWGCWC 1 cut(s) 786
BbvI GCAGC 1 cut(s) 718
BccI CCATC 1 cut(s) 604
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 2 cut(s) 186, 856
BfmI CTRYAG 1 cut(s) 825
BisI GCNGC 1 cut(s) 707
BlsI GCNGC 1 cut(s) 708
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 2 cut(s) 378, 759
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 408
BsaJI CCNNGG 1 cut(s) 813
Bse1I ACTGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 813
BseGI GGATG 2 cut(s) 423, 445
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 430, 580
BseSI GKGCMC 1 cut(s) 822
BseXI GCAGC 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 765
BshFI GGCC 1 cut(s) 529
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 786
BsiHKCI CYCGRG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 771
BsmAI GTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 771
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 529
Bso31I GGTCTC 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 786, 822
Bsp143I GATC 5 cut(s) 73, 115, 151, 164, 394
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 2 cut(s) 98, 727
BspANI GGCC 1 cut(s) 529
BspFNI CGCG 1 cut(s) 765
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 378, 759
BspMAI CTGCAG 1 cut(s) 829
BspPI GGATC 4 cut(s) 68, 123, 159, 389
BspQI GCTCTTC 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 813
BssMI GATC 5 cut(s) 73, 115, 151, 164, 394
BssT1I CCWWGG 1 cut(s) 813
Bst6I CTCTTC 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 662
BstDEI CTNAG 2 cut(s) 384, 405
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 2 cut(s) 423, 445
BstFNI CGCG 1 cut(s) 765
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 5 cut(s) 76, 118, 154, 167, 397
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 5 cut(s) 73, 115, 151, 164, 394
BstMWI GCNNNNNNNGC 2 cut(s) 662, 715
BstSFI CTRYAG 1 cut(s) 825
BstSLI GKGCMC 1 cut(s) 822
BstUI CGCG 1 cut(s) 765
BstV1I GCAGC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 529
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 2 cut(s) 423, 445
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 1 cut(s) 822
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 758
Csp6I GTAC 4 cut(s) 161, 301, 377, 402
CviAII CATG 5 cut(s) 224, 311, 685, 754, 814
CviJI RGCY 6 cut(s) 41, 383, 529, 545, 773, 855
CviKI_1 RGCY 6 cut(s) 41, 383, 529, 545, 773, 855
CviQI GTAC 4 cut(s) 161, 301, 377, 402
DdeI CTNAG 2 cut(s) 384, 405
DpnI GATC 5 cut(s) 75, 117, 153, 166, 396
DpnII GATC 5 cut(s) 73, 115, 151, 164, 394
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 813
Eco147I AGGCCT 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 813
FaeI CATG 5 cut(s) 227, 314, 688, 757, 817
FaqI GGGAC 1 cut(s) 771
FatI CATG 5 cut(s) 223, 310, 684, 753, 813
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 707
FokI GGATG 2 cut(s) 410, 432
Fsp4HI GCNGC 1 cut(s) 707
FspBI CTAG 2 cut(s) 186, 856
GlaI GCGC 1 cut(s) 766
GluI GCNGC 1 cut(s) 707
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 529
HhaI GCGC 1 cut(s) 767
Hin1II CATG 5 cut(s) 227, 314, 688, 757, 817
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 6 cut(s) 269, 388, 479, 491, 509, 590
HpaI GTTAAC 1 cut(s) 144
HphI GGTGA 2 cut(s) 161, 465
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 5 cut(s) 205, 224, 392, 452, 513
Hpy8I GTNNAC 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 6 cut(s) 48, 213, 329, 355, 665, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 662, 715
HpyF3I CTNAG 2 cut(s) 384, 405
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 5 cut(s) 227, 314, 688, 757, 817
HspAI GCGC 1 cut(s) 765
KpnI GGTACC 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 5 cut(s) 73, 115, 151, 164, 394
LguI GCTCTTC 1 cut(s) 535
LmnI GCTCC 2 cut(s) 567, 613
LpnPI CCDG 7 cut(s) 97, 132, 393, 405, 465, 489, 547
Lsp1109I GCAGC 1 cut(s) 718
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 186, 856
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 641
MalI GATC 5 cut(s) 75, 117, 153, 166, 396
MboI GATC 5 cut(s) 73, 115, 151, 164, 394
MboII GAAGA 7 cut(s) 58, 193, 257, 275, 328, 549, 552
MfeI CAATTG 1 cut(s) 629
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 786, 822
MluCI AATT 7 cut(s) 106, 130, 194, 219, 348, 617, 629
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 7 cut(s) 408, 442, 451, 459, 558, 682, 838
MseI TTAA 3 cut(s) 59, 143, 197
MunI CAATTG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 329
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 2 cut(s) 662, 715
NcoI CCATGG 1 cut(s) 813
NdeII GATC 5 cut(s) 73, 115, 151, 164, 394
NlaIII CATG 5 cut(s) 227, 314, 688, 757, 817
NlaIV GGNNCC 2 cut(s) 378, 759
NmuCI GTSAC 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 237
PagI TCATGA 1 cut(s) 223
PceI AGGCCT 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 535
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 5 cut(s) 269, 479, 491, 509, 590
PkrI GCNGC 1 cut(s) 708
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PshBI ATTAAT 1 cut(s) 197
Psp1406I AACGTT 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 378, 759
PspPI GGNCC 1 cut(s) 758
PspXI VCTCGAGB 1 cut(s) 237
PstI CTGCAG 1 cut(s) 829
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 4 cut(s) 162, 302, 378, 403
RsaNI GTAC 4 cut(s) 161, 301, 377, 402
SapI GCTCTTC 1 cut(s) 535
SaqAI TTAA 3 cut(s) 59, 143, 197
SatI GCNGC 1 cut(s) 707
Sau3AI GATC 5 cut(s) 73, 115, 151, 164, 394
Sau96I GGNCC 1 cut(s) 758
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 2 cut(s) 786, 822
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 758
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 7 cut(s) 106, 130, 194, 219, 348, 617, 629
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 2 cut(s) 98, 727
SspMI CTAG 2 cut(s) 186, 856
StuI AGGCCT 1 cut(s) 529
StyI CCWWGG 1 cut(s) 813
TaiI ACGT 1 cut(s) 325
TaqI TCGA 4 cut(s) 118, 238, 286, 514
TasI AATT 7 cut(s) 106, 130, 194, 219, 348, 617, 629
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 5 cut(s) 269, 479, 491, 509, 590
Tru1I TTAA 3 cut(s) 59, 143, 197
Tru9I TTAA 3 cut(s) 59, 143, 197
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 6 cut(s) 17, 212, 380, 483, 710, 714
TspGWI ACGGA 2 cut(s) 66, 281
TspRI CASTG 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 758
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 2 cut(s) 219, 348
XhoI CTCGAG 1 cut(s) 237
XspI CTAG 2 cut(s) 186, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.