FvH4_4g18641

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000705
Physical Location & Seq
Forward (+)
22499842 .. 22501023
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18641.t1

Sequence Viewer

Length: 867 bp
ATGGCCTCTACCTCAAAAAAATTAGGAAATTGGATGCCAAAAGAAGATGAAGCTCTCACTATTGCTTATGTCCAAGTCTCGGAAGATATGAAGAAGGGTATCAACCAATCAAAAGAAGGGCTTTGGGGACAAGTTCAACAAACATACTTGAATTACTATGAAGGCACCACACTTCCGAAGGCAAGATCGGAAGATAGTTGTAATTCTCGATGGAAAAAGCATATTTATCCAAACATGAACAAATGGCATACTTGTCTCAAGCGTTCCGAAAGAAGGGATGAAAGTGGAGCAAATCTCCAAGACATACAACGATTAGCCGAGAGTTTCTTTAGGGATAAGTCCGGAGGAGCACCATTTAAATTTGGTAAATGTTATGATCTTTGCAAAGATTGGGTGATGTTTCAAGATCCACCCCAAGAAGAATTCGGAGCAATACCTGTGCAACACAATATCTCAATTTCCTTAGAGGACGACGAGGATCCCATTGAGAATTCTCCTACTGCATCTCAAACGCCAATTCCTAGGCCTAAGGGAAGAAATGCCGCAAGAAAAGCAAGGCAAAAGGGCAAAGAGGAGGAAGTCAAAGCTATTGGAGAAGAAATGGTAGCCGGAATGCGAGAAATGGCGGCACAAATGAAAGTGGCGGAAGAGGAAAGGAAGAGAAGAGACAAGAAAAGGGAGGATCGAAGAGAGGTTGCTAGGTTAGAGAATATCTTAATGATGCAAACTCTTGATTTCACTCCAATGAGTAAAAAGTATTTTGATGGCAAGAAAAGGGAGGCACTTCACAAACTACAAGGACGAGAGTTGTTTCCGGATGAAGATGTTTATCGTCCACAAACGCCATCCGATGAAGATGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

289

Amino Acids

33.4

Weight (kDa)

6.93

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccIII TCCGGA 2 cut(s) 341, 814
AciI CCGC 3 cut(s) 543, 626, 644
AclWI GGATC 4 cut(s) 401, 473, 486, 690
AcsI RAATTY 3 cut(s) 359, 422, 490
AfiI CCNNNNNNNGG 2 cut(s) 79, 273
AgsI TTSAA 3 cut(s) 137, 151, 404
AluBI AGCT 3 cut(s) 53, 587, 863
AluI AGCT 3 cut(s) 53, 587, 863
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 3 cut(s) 82, 260, 660
AlwI GGATC 4 cut(s) 401, 473, 486, 690
Aor13HI TCCGGA 2 cut(s) 341, 814
AoxI GGCC 2 cut(s) 3, 524
ApoI RAATTY 3 cut(s) 359, 422, 490
AspA2I CCTAGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 406
AvrII CCTAGG 1 cut(s) 521
AxyI CCTNAGG 1 cut(s) 528
BamHI GGATCC 1 cut(s) 478
BanI GGYRCC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 352
BccI CCATC 3 cut(s) 204, 758, 853
BcoDI GTCTC 3 cut(s) 82, 260, 660
BfaI CTAG 2 cut(s) 522, 699
BisI GCNGC 2 cut(s) 543, 627
BlnI CCTAGG 1 cut(s) 521
BlsI GCNGC 2 cut(s) 544, 628
BmiI GGNNCC 2 cut(s) 166, 480
BmsI GCATC 3 cut(s) 24, 512, 711
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpuEI CTTGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 1 cut(s) 521
BsaWI WCCGGW 2 cut(s) 341, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 273
Bse21I CCTNAGG 1 cut(s) 528
Bse8I GATNNNNATC 1 cut(s) 828
BseAI TCCGGA 2 cut(s) 341, 814
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 4 cut(s) 39, 283, 823, 845
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 2 cut(s) 79, 273
BseRI GAGGAG 2 cut(s) 360, 587
BshFI GGCC 2 cut(s) 5, 526
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 3 cut(s) 342, 609, 815
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 79, 273
BsmAI GTCTC 3 cut(s) 82, 260, 660
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 5, 526
Bsp1286I GDGCHC 1 cut(s) 352
Bsp13I TCCGGA 2 cut(s) 341, 814
Bsp143I GATC 5 cut(s) 185, 376, 406, 478, 682
BspACI CCGC 3 cut(s) 543, 626, 644
BspANI GGCC 2 cut(s) 5, 526
BspEI TCCGGA 2 cut(s) 341, 814
BspLI GGNNCC 2 cut(s) 166, 480
BspPI GGATC 4 cut(s) 401, 473, 486, 690
BspT107I GGYRCC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 5 cut(s) 185, 376, 406, 478, 682
BssT1I CCWWGG 1 cut(s) 521
Bst6I CTCTTC 4 cut(s) 642, 653, 658, 682
BstDEI CTNAG 3 cut(s) 463, 528, 864
BstF5I GGATG 4 cut(s) 39, 283, 823, 845
BstKTI GATC 5 cut(s) 188, 379, 409, 481, 685
BstMAI GTCTC 3 cut(s) 82, 260, 660
BstMBI GATC 5 cut(s) 185, 376, 406, 478, 682
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstX2I RGATCY 2 cut(s) 406, 478
BstYI RGATCY 2 cut(s) 406, 478
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 2 cut(s) 5, 526
BtsCI GGATG 4 cut(s) 39, 283, 823, 845
CviAII CATG 1 cut(s) 235
CviJI RGCY 8 cut(s) 5, 53, 121, 317, 526, 587, 608, 863
CviKI_1 RGCY 8 cut(s) 5, 53, 121, 317, 526, 587, 608, 863
DdeI CTNAG 3 cut(s) 463, 528, 864
DpnI GATC 5 cut(s) 187, 378, 408, 480, 684
DpnII GATC 5 cut(s) 185, 376, 406, 478, 682
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 4 cut(s) 642, 653, 658, 682
EarI CTCTTC 4 cut(s) 642, 653, 658, 682
EciI GGCGGA 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 521
Eco147I AGGCCT 1 cut(s) 526
Eco81I CCTNAGG 1 cut(s) 528
EcoRI GAATTC 2 cut(s) 422, 490
EcoT14I CCWWGG 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 1 cut(s) 238
FaiI YATR 9 cut(s) 69, 89, 145, 159, 222, 236, 249, 305, 375
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 543, 627
FokI GGATG 4 cut(s) 46, 290, 830, 832
Fsp4HI GCNGC 2 cut(s) 543, 627
FspBI CTAG 2 cut(s) 522, 699
GluI GCNGC 2 cut(s) 543, 627
HaeIII GGCC 2 cut(s) 5, 526
HapII CCGG 3 cut(s) 342, 609, 815
Hin1II CATG 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 861
HpaII CCGG 3 cut(s) 342, 609, 815
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 836
Hpy188I TCNGA 6 cut(s) 82, 177, 190, 268, 428, 850
Hpy188III TCNNGA 5 cut(s) 207, 342, 404, 731, 815
Hpy8I GTNNAC 1 cut(s) 836
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 5 cut(s) 88, 110, 155, 172, 267
HpyCH4V TGCA 4 cut(s) 384, 442, 503, 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 3 cut(s) 463, 528, 864
Hsp92II CATG 1 cut(s) 238
Kpn2I TCCGGA 2 cut(s) 341, 814
Kzo9I GATC 5 cut(s) 185, 376, 406, 478, 682
LmnI GCTCC 3 cut(s) 287, 347, 428
LpnPI CCDG 4 cut(s) 355, 450, 622, 828
LweI GCATC 3 cut(s) 24, 512, 711
MaeI CTAG 2 cut(s) 522, 699
MalI GATC 5 cut(s) 187, 378, 408, 480, 684
MboI GATC 5 cut(s) 185, 376, 406, 478, 682
MflI RGATCY 2 cut(s) 406, 478
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 9 cut(s) 20, 28, 151, 202, 359, 422, 456, 490, 516
MroI TCCGGA 2 cut(s) 341, 814
MseI TTAA 2 cut(s) 357, 716
MslI CAYNNNNRTG 1 cut(s) 743
MspI CCGG 3 cut(s) 342, 609, 815
Mva1269I GAATGC 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 551
NdeII GATC 5 cut(s) 185, 376, 406, 478, 682
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 166, 480
NmeAIII GCCGAG 1 cut(s) 343
PceI AGGCCT 1 cut(s) 526
PctI GAATGC 1 cut(s) 618
PkrI GCNGC 2 cut(s) 544, 628
PspN4I GGNNCC 2 cut(s) 166, 480
PsuI RGATCY 2 cut(s) 406, 478
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 2 cut(s) 357, 716
SatI GCNGC 2 cut(s) 543, 627
Sau3AI GATC 5 cut(s) 185, 376, 406, 478, 682
SduI GDGCHC 1 cut(s) 352
SetI ASST 7 cut(s) 14, 55, 439, 589, 696, 704, 865
SfaNI GCATC 3 cut(s) 24, 512, 711
SmiI ATTTAAAT 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 9 cut(s) 20, 28, 151, 202, 359, 422, 456, 490, 516
SseBI AGGCCT 1 cut(s) 526
SsiI CCGC 3 cut(s) 543, 626, 644
SspMI CTAG 2 cut(s) 522, 699
StuI AGGCCT 1 cut(s) 526
StyI CCWWGG 1 cut(s) 521
SwaI ATTTAAAT 1 cut(s) 358
TaqI TCGA 2 cut(s) 208, 685
TasI AATT 9 cut(s) 20, 28, 151, 202, 359, 422, 456, 490, 516
TauI GCSGC 2 cut(s) 545, 629
Tru1I TTAA 2 cut(s) 357, 716
Tru9I TTAA 2 cut(s) 357, 716
TspDTI ATGAA 8 cut(s) 63, 104, 174, 251, 294, 650, 834, 867
XapI RAATTY 3 cut(s) 359, 422, 490
XmaJI CCTAGG 1 cut(s) 521
XspI CTAG 2 cut(s) 522, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.