Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000705

Physical Location & Seq

Genomic Coordinates Reverse (-)

2671107 .. 2672107

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAACGAACGCAGTCGATTGCTTATGCCAAGAAGAGAGACTGAACTTCCAAGAGAATGGGAGCGGGATTCCGATCAGCCATTTCACGCTAAGATTGTATCAGTTCATACCGGTGAAATGAAAGAGATGGACTGGTTCCAGATGGAGTTTCCCAAATGTGAGGTGCTGATTTTGAATTTTTCATCCGCCGATGAGTACCTTATGCCTCCTTTCATTGCAAACATGCCAAAGTTGAGGGCATTGATAATCATGAATTACAGTACTTCGAATGCCATCCTAGGTGGCTTTTCAGTCTTCCCAAATTTATCCAACTTGAGAAGCCTCTGGCTCGAAAAAGTATCTGTCCCTCGATTATCTACCATCCCCTTGAAAAATTTGAGGAAAATTTATATAATCCTATGCAAGATCAGTAATAGCCTTGATCAATCTGTCTTTCCTCGGCTTACAGAGCTCACGATTGATCATTGCAATGACTTATTCCAGCTGCCTTCGTGCATTTGTGCAATGCCTTCGCTCAAGAACTTGAGCGTAACCAACTGCCACAGCCTATACCACCTCCCAGCTGATTTGGGAAAGCTGCAATCTCTACAGATCCTAAGGCTATACGCCTGTCCGGCACTTCAGACGCTTCCGGGCAGCATTTGCGAGCTACTTCGCTTGAAGTACATGGACATTTCCCAATGTGTAAATTTGAGATGCCTTCCCATGGACATTGGTAAGCTAGCAAGTTTGGAAAAGATTGACATGAGGGAATGTTCACAAATTAGCAATCTGCCGAAATCCGCTGCAGTGTTACAGTCTCTGCGCCGTGTAGTATGCGACGAGGATATTTCTTGGATGTGGAGAGATGCAGAGAAGGCATTGCCGGAGCTTCATGTGATAGAAAATTGGGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009987 GO:0010035 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0023052 GO:0042221 GO:0042742 GO:0043207 GO:0044237 GO:0044464 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0080167 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

300

Amino Acids

34.33

Weight (kDa)

6.98

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica	MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica	Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis	pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis	RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata	RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora	Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii	Rroxscaffold_1G00024040
rosa_samantha	Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana	Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	3 cut(s)	64, 186, 783
AclWI	GGATC	1 cut(s)	586
AcsI	RAATTY	5 cut(s)	175, 301, 373, 384, 688
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	3 cut(s)	197, 262, 665
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	175, 370, 661
AluBI	AGCT	7 cut(s)	451, 484, 563, 577, 649, 721, 871
AluI	AGCT	7 cut(s)	451, 484, 563, 577, 649, 721, 871
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	32, 804
AlwI	GGATC	1 cut(s)	586
AlwNI	CAGNNNCTG	1 cut(s)	802
ApeKI	GCWGC	4 cut(s)	484, 577, 636, 785
ApoI	RAATTY	5 cut(s)	175, 301, 373, 384, 688
AsiGI	ACCGGT	1 cut(s)	110
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	807
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	266
AsuNHI	GCTAGC	1 cut(s)	721
AvrII	CCTAGG	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	471, 564, 648, 772
BccI	CCATC	4 cut(s)	121, 136, 281, 368
BceAI	ACGGC	1 cut(s)	792
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BclI	TGATCA	2 cut(s)	421, 460
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	32, 804
BfaI	CTAG	2 cut(s)	278, 722
BfmI	CTRYAG	2 cut(s)	587, 786
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	4 cut(s)	485, 578, 637, 786
BlnI	CCTAGG	1 cut(s)	277
BlsI	GCNGC	4 cut(s)	486, 579, 638, 787
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	633
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	2 cut(s)	686, 838
BmtI	GCTAGC	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	3 cut(s)	334, 500, 544
BpuMI	CCSGG	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	277, 437, 705
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	596
Bse3DI	GCAATG	5 cut(s)	213, 463, 475, 510, 860
Bse8I	GATNNNNATC	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	277, 437, 705
BseGI	GGATG	4 cut(s)	182, 273, 360, 843
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	5 cut(s)	213, 463, 475, 510, 860
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	4 cut(s)	471, 564, 648, 772
BseYI	CCCAGC	1 cut(s)	559
BshTI	ACCGGT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	111, 614, 632, 866
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	2 cut(s)	32, 804
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	5 cut(s)	73, 405, 421, 460, 591
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	3 cut(s)	64, 186, 783
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	790
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	1 cut(s)	586
BspT104I	TTCGAA	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	5 cut(s)	213, 463, 475, 510, 860
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	277, 437, 705
BssMI	GATC	5 cut(s)	73, 405, 421, 460, 591
BssT1I	CCWWGG	2 cut(s)	277, 705
Bst4CI	ACNGT	2 cut(s)	260, 798
Bst6I	CTCTTC	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	642
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	647, 723
BstDEI	CTNAG	2 cut(s)	90, 596
BstDSI	CCRYGG	1 cut(s)	705
BstF5I	GGATG	4 cut(s)	182, 273, 360, 843
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	5 cut(s)	76, 408, 424, 463, 594
BstMAI	GTCTC	2 cut(s)	32, 804
BstMBI	GATC	5 cut(s)	73, 405, 421, 460, 591
BstMWI	GCNNNNNNNGC	4 cut(s)	448, 614, 642, 857
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	587, 786
BstV1I	GCAGC	4 cut(s)	471, 564, 648, 772
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	591
Bsu36I	CCTNAGG	1 cut(s)	596
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	4 cut(s)	182, 273, 360, 843
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	1 cut(s)	795
Cac8I	GCNNGC	2 cut(s)	647, 723
CaiI	CAGNNNCTG	1 cut(s)	802
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	196, 261, 664
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	6 cut(s)	223, 250, 667, 706, 745, 875
CviQI	GTAC	3 cut(s)	196, 261, 664
DdeI	CTNAG	2 cut(s)	90, 596
DpnI	GATC	5 cut(s)	75, 407, 423, 462, 593
DpnII	GATC	5 cut(s)	73, 405, 421, 460, 591
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	277, 705
Eco24I	GRGCYC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	605
Eco81I	CCTNAGG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	277, 705
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	277, 705
FaeI	CATG	6 cut(s)	226, 253, 670, 709, 748, 878
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	6 cut(s)	222, 249, 666, 705, 744, 874
FauI	CCCGC	1 cut(s)	57
FbaI	TGATCA	2 cut(s)	421, 460
Fnu4HI	GCNGC	4 cut(s)	485, 578, 637, 786
FokI	GGATG	4 cut(s)	169, 260, 347, 850
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	4 cut(s)	485, 578, 637, 786
FspBI	CTAG	2 cut(s)	278, 722
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	4 cut(s)	485, 578, 637, 786
GsaI	CCCAGC	1 cut(s)	563
HapII	CCGG	4 cut(s)	111, 614, 632, 866
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	6 cut(s)	226, 253, 670, 709, 748, 878
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	4 cut(s)	111, 614, 632, 866
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	758
Hpy188I	TCNGA	2 cut(s)	73, 624
Hpy188III	TCNNGA	4 cut(s)	139, 250, 454, 517
Hpy8I	GTNNAC	1 cut(s)	758
Hpy99I	CGWCG	1 cut(s)	824
HpyAV	CCTTC	4 cut(s)	498, 519, 710, 850
HpyCH4III	ACNGT	2 cut(s)	260, 798
HpyCH4V	TGCA	8 cut(s)	218, 402, 468, 495, 503, 580, 788, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	448, 614, 642, 857
HpyF3I	CTNAG	2 cut(s)	90, 596
Hsp92II	CATG	6 cut(s)	226, 253, 670, 709, 748, 878
HspAI	GCGC	1 cut(s)	805
Ksp22I	TGATCA	2 cut(s)	421, 460
Kzo9I	GATC	5 cut(s)	73, 405, 421, 460, 591
LmnI	GCTCC	2 cut(s)	61, 868
Lsp1109I	GCAGC	4 cut(s)	471, 564, 648, 772
LweI	GCATC	2 cut(s)	686, 838
MaeI	CTAG	2 cut(s)	278, 722
MaeIII	GTNAC	2 cut(s)	529, 792
MalI	GATC	5 cut(s)	75, 407, 423, 462, 593
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	5 cut(s)	73, 405, 421, 460, 591
MboII	GAAGA	2 cut(s)	45, 286
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	8 cut(s)	175, 253, 301, 373, 384, 688, 762, 886
MmeI	TCCRAC	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	111, 468
MspA1I	CMGCKG	3 cut(s)	484, 563, 785
MspI	CCGG	4 cut(s)	111, 614, 632, 866
MspR9I	CCNGG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	274
MwoI	GCNNNNNNNGC	4 cut(s)	448, 614, 642, 857
NciI	CCSGG	1 cut(s)	633
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	5 cut(s)	73, 405, 421, 460, 591
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	6 cut(s)	226, 253, 670, 709, 748, 878
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	418
NspI	RCATGY	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	266
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	486, 579, 638, 787
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	802
PsuI	RGATCY	1 cut(s)	591
PvuII	CAGCTG	2 cut(s)	484, 563
RsaI	GTAC	3 cut(s)	197, 262, 665
RsaNI	GTAC	3 cut(s)	196, 261, 664
RseI	CAYNNNNRTG	2 cut(s)	111, 468
SacI	GAGCTC	1 cut(s)	453
SatI	GCNGC	4 cut(s)	485, 578, 637, 786
Sau3AI	GATC	5 cut(s)	73, 405, 421, 460, 591
ScaI	AGTACT	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	686, 838
SfcI	CTRYAG	2 cut(s)	587, 786
SfuI	TTCGAA	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	111, 468
SmlI	CTYRAG	3 cut(s)	313, 515, 523
SmoI	CTYRAG	3 cut(s)	313, 515, 523
Sse9I	AATT	8 cut(s)	175, 253, 301, 373, 384, 688, 762, 886
SsiI	CCGC	3 cut(s)	64, 186, 783
SspMI	CTAG	2 cut(s)	278, 722
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	277, 705
TaaI	ACNGT	2 cut(s)	260, 798
TaqI	TCGA	4 cut(s)	16, 266, 330, 349
TasI	AATT	8 cut(s)	175, 253, 301, 373, 384, 688, 762, 886
TatI	WGTACW	2 cut(s)	260, 663
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	4 cut(s)	484, 577, 636, 785
TspDTI	ATGAA	7 cut(s)	17, 95, 134, 171, 202, 266, 863
TspRI	CASTG	1 cut(s)	795
XapI	RAATTY	5 cut(s)	175, 301, 373, 384, 688
XceI	RCATGY	1 cut(s)	226
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	2 cut(s)	278, 722
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.