pycom17g22320

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000705
Physical Location & Seq
Reverse (-)
20749763 .. 20750978
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g22320.1

Sequence Viewer

Length: 1107 bp
ATGACAAGGGGAAAATCATTCACGTTGGATCAAGATGTTGCTGTTTGCAATGCTCGGTTAAGTGTCTCTCAGGATCTGCTCAATGTTGTTCCGCAATCAAAATGTATTTCCTGGGATCGAATATACCAAAAATATGTTGAGATAACTGGTGATCAAAATGAGCGATCACGATGTTCTGTCCAGTCTAGGTGGAAAATAATTCTTGGAAGTTGCAATCAGTTTCATGAATGTCTTACCAAAATAGAAGAGAAACAAAGTGGATTGACAGAATCTAACAAGGTTCTTCAAGCAAATATATTGTACTTGAAGCTTGAGAAGAAACGTTTTGCATTCAATCATTGCTGGGAAATTTTGCAGCATAGCATCAAATGGAAAGGTTTGACACCGGCAAAGAGGTCTGATATTGATACTATGGTTACAGACTGGTATGATCCTCCTATTGTGGCTGCAAACCTGAACATCACTTCCTCACCGACGAGGTCTGGTACTCATACTATGGCTACAGACACAAATGTTGATTCCTCACCCAAGAGGTCAGATCCTCCTACTGTTGCTGCAAACTTGAACATCAATTCCTCACCGAAGAGGTCTGATCCTCATTCTATTGCGACAAACCCGAACAATGATTCCTCATTCTCTTCACAATCAAAGGAGTCTGACACTCTCGTCTCACATGACACTGACAAAGATCCATATTATACAGCTGAATTTCTTAAAAGGAAACGATCCAGAAGAAGAGCTGAAAAAGAAGCATGCAAAAGAAGCAAGGTAGTAGAAACTTTGGATTCTCGTTTATGTGACGTGATGGAGAAGCTTACCAAACAATTGGCCGAAACAGATGACAGAAAGGCGAAAATTGCAGAAAGAAAGGTAAAGGTGATGGAGGAAGCAAATGAAAGGGAGCAAAGAGAGCATGATGACCGAATTATGAGTATGGACACCACCAAGATGGAGCCACGCGCAAGAGCTTACTACGAGCAGCGAAAGAATGATGTTTATTTCAAAACTATGGCACACAGTAAAGACTCTTCCAATATGGATCTGCACACAATAGCTCACTACGATCGTAGTGATATTTATACGAAAATGATGGCACACGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

369

Amino Acids

42.4

Weight (kDa)

8.73

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 107 - 331 9.5e-11 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 665
AccII CGCG 1 cut(s) 960
AciI CCGC 1 cut(s) 92
AclI AACGTT 1 cut(s) 322
AclWI GGATC 9 cut(s) 36, 81, 123, 425, 533, 587, 683, 720, 1047
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 2 cut(s) 348, 707
AfaI GTAC 2 cut(s) 302, 487
AgsI TTSAA 5 cut(s) 287, 307, 334, 565, 1003
AjiI CACGTC 1 cut(s) 802
AjnI CCWGG 1 cut(s) 110
AloI GAACNNNNNNTCC 6 cut(s) 449, 481, 557, 589, 611, 643
AluBI AGCT 6 cut(s) 310, 704, 740, 814, 968, 1055
AluI AGCT 6 cut(s) 310, 704, 740, 814, 968, 1055
Alw26I GTCTC 2 cut(s) 70, 673
AlwI GGATC 9 cut(s) 36, 81, 123, 425, 533, 587, 683, 720, 1047
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 1 cut(s) 828
ApeKI GCWGC 4 cut(s) 355, 446, 554, 979
ApoI RAATTY 2 cut(s) 348, 707
AspLEI GCGC 1 cut(s) 962
AsuHPI GGTGA 5 cut(s) 161, 462, 516, 570, 889
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BarI GAAGNNNNNNTAC 2 cut(s) 1012, 1044
BbvI GCAGC 4 cut(s) 367, 433, 541, 991
BccI CCATC 4 cut(s) 799, 874, 943, 1084
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 70, 673
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 4 cut(s) 356, 447, 555, 980
BlsI GCNGC 4 cut(s) 357, 448, 556, 981
Bme1390I CCNGG 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 802
BmiI GGNNCC 1 cut(s) 954
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 151, 181, 428
Bse3DI GCAATG 2 cut(s) 55, 337
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 111
BseMI GCAATG 2 cut(s) 55, 337
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 3 cut(s) 151, 181, 428
BseXI GCAGC 4 cut(s) 367, 433, 541, 991
BseYI CCCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 1028
Bsh1236I CGCG 1 cut(s) 960
Bsh1285I CGRYCG 1 cut(s) 1066
BshFI GGCC 1 cut(s) 830
BsiEI CGRYCG 1 cut(s) 1066
BsiSI CCGG 1 cut(s) 386
BsmAI GTCTC 2 cut(s) 70, 673
BsmBI CGTCTC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 830
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 830
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 960
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 954
BspPI GGATC 9 cut(s) 36, 81, 123, 425, 533, 587, 683, 720, 1047
BspQI GCTCTTC 1 cut(s) 730
BsrDI GCAATG 2 cut(s) 55, 337
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 3 cut(s) 151, 181, 428
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 550, 1019
Bst6I CTCTTC 5 cut(s) 240, 578, 643, 730, 1033
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 960
BstHHI GCGC 1 cut(s) 962
BstMAI GTCTC 2 cut(s) 70, 673
BstMCI CGRYCG 1 cut(s) 1066
BstMWI GCNNNNNNNGC 3 cut(s) 762, 857, 910
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 756
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 4 cut(s) 367, 433, 541, 991
BstX2I RGATCY 4 cut(s) 73, 538, 688, 1039
BstXI CCANNNNNNTGG 2 cut(s) 826, 949
BstYI RGATCY 4 cut(s) 73, 538, 688, 1039
BsuRI GGCC 1 cut(s) 830
BtrI CACGTC 1 cut(s) 802
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 1 cut(s) 754
CaiI CAGNNNCTG 1 cut(s) 76
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 962
Cfr10I RCCGGY 1 cut(s) 385
Csp6I GTAC 2 cut(s) 301, 486
CviAII CATG 4 cut(s) 224, 674, 753, 914
CviQI GTAC 2 cut(s) 301, 486
DdeI CTNAG 1 cut(s) 69
DrdI GACNNNNNNGTC 1 cut(s) 665
DseDI GACNNNNNNGTC 1 cut(s) 665
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 5 cut(s) 240, 578, 643, 730, 1033
EarI CTCTTC 5 cut(s) 240, 578, 643, 730, 1033
EcoRII CCWGG 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 673
FaeI CATG 4 cut(s) 227, 677, 756, 917
FatI CATG 4 cut(s) 223, 673, 752, 913
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 4 cut(s) 356, 447, 555, 980
Fsp4HI GCNGC 4 cut(s) 356, 447, 555, 980
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 961
GluI GCNGC 4 cut(s) 356, 447, 555, 980
GsaI CCCAGC 1 cut(s) 346
HaeIII GGCC 1 cut(s) 830
HapII CCGG 1 cut(s) 386
HhaI GCGC 1 cut(s) 962
Hin1II CATG 4 cut(s) 227, 677, 756, 917
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HindIII AAGCTT 2 cut(s) 308, 812
HinfI GANTC 7 cut(s) 269, 518, 626, 653, 785, 1025, 1100
HpaII CCGG 1 cut(s) 386
HphI GGTGA 5 cut(s) 161, 462, 516, 570, 889
Hpy188I TCNGA 4 cut(s) 400, 538, 592, 658
Hpy188III TCNNGA 5 cut(s) 32, 71, 168, 224, 729
Hpy99I CGWCG 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 550, 1019
HpyCH4IV ACGT 3 cut(s) 23, 322, 801
HpyCH4V TGCA 9 cut(s) 48, 213, 329, 355, 449, 557, 756, 860, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 762, 857, 910
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 3 cut(s) 23, 322, 801
Hsp92II CATG 4 cut(s) 227, 677, 756, 917
HspAI GCGC 1 cut(s) 960
Ksp22I TGATCA 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 730
LmnI GCTCC 2 cut(s) 901, 952
Lsp1109I GCAGC 4 cut(s) 367, 433, 541, 991
LweI GCATC 1 cut(s) 372
MaeI CTAG 1 cut(s) 186
MaeII ACGT 3 cut(s) 23, 322, 801
MaeIII GTNAC 2 cut(s) 415, 797
MboII GAAGA 8 cut(s) 257, 275, 328, 595, 630, 744, 747, 1020
MfeI CAATTG 1 cut(s) 824
MflI RGATCY 4 cut(s) 73, 538, 688, 1039
MluCI AATT 7 cut(s) 198, 348, 571, 707, 824, 855, 924
MlyI GAGTC 2 cut(s) 662, 1019
MmeI TCCRAC 1 cut(s) 6
MseI TTAA 2 cut(s) 59, 714
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 3 cut(s) 762, 857, 910
NlaIII CATG 4 cut(s) 227, 677, 756, 917
NlaIV GGNNCC 1 cut(s) 954
NmuCI GTSAC 1 cut(s) 797
NspI RCATGY 1 cut(s) 756
PaeI GCATGC 1 cut(s) 756
PagI TCATGA 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 730
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 5 cut(s) 269, 518, 626, 785, 1100
PflFI GACNNNGTC 1 cut(s) 478
PkrI GCNGC 4 cut(s) 357, 448, 556, 981
Ple19I CGATCG 1 cut(s) 1066
PleI GAGTC 2 cut(s) 661, 1019
PpsI GAGTC 2 cut(s) 661, 1019
Psp1406I AACGTT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 342
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 954
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 4 cut(s) 73, 538, 688, 1039
PsyI GACNNNGTC 1 cut(s) 478
PvuI CGATCG 1 cut(s) 1066
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 2 cut(s) 302, 487
RsaNI GTAC 2 cut(s) 301, 486
RseI CAYNNNNRTG 1 cut(s) 947
SapI GCTCTTC 1 cut(s) 730
SaqAI TTAA 2 cut(s) 59, 714
SatI GCNGC 4 cut(s) 356, 447, 555, 980
SchI GAGTC 2 cut(s) 662, 1019
ScrFI CCNGG 1 cut(s) 112
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SphI GCATGC 1 cut(s) 756
Sse9I AATT 7 cut(s) 198, 348, 571, 707, 824, 855, 924
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 550, 1019
TaiI ACGT 3 cut(s) 26, 325, 804
TaqI TCGA 1 cut(s) 118
TaqII GACCGA 1 cut(s) 936
TasI AATT 7 cut(s) 198, 348, 571, 707, 824, 855, 924
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 5 cut(s) 269, 518, 626, 785, 1100
Tru1I TTAA 2 cut(s) 59, 714
Tru9I TTAA 2 cut(s) 59, 714
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 4 cut(s) 355, 446, 554, 979
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 4 cut(s) 212, 240, 909, 1092
TspRI CASTG 1 cut(s) 685
Tth111I GACNNNGTC 1 cut(s) 478
XapI RAATTY 2 cut(s) 348, 707
XceI RCATGY 1 cut(s) 756
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.