Rmu_sc0003642.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003642.1
OG0000705
Physical Location & Seq
Reverse (-)
18086 .. 18457
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003642.1_g000004.1.cds

Sequence Viewer

Length: 372 bp
atgtttaggcaagacatgaaagggaaatcgttcaattttcatagttgctacgatttgtgcaaagattgggtgacatttgacacaccctcgcaagaacattttggtccacccctggtgcaaagaaaccacccggtgtccttggaagatgatgatgatcctgtcgatagtagttcaacaccaactttatctagggatccgattcctaggccgatgggaagaaatgccgcaagaagaaagcaaatcaaggaccaagaaaaggagaagaaagcctttgaagataagttattagcttgcatggatcgattggcggaagataatgcgaaggcggaagaggcaaaagcaataagggagaacatgaaggaagatcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.27

Weight (kDa)

5.64

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 225, 308, 326
AclWI GGATC 4 cut(s) 149, 188, 201, 306
AdeI CACNNNGTG 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 3 cut(s) 34, 174, 275
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 4 cut(s) 149, 188, 201, 306
AoxI GGCC 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 29
AspA2I CCTAGG 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 104, 247
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 104, 247
AvrII CCTAGG 1 cut(s) 203
BamHI GGATCC 1 cut(s) 193
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 189, 204
BisI GCNGC 1 cut(s) 225
BlnI CCTAGG 1 cut(s) 203
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 2 cut(s) 113, 131
Bme18I GGWCC 2 cut(s) 104, 247
BmgT120I GGNCC 2 cut(s) 104, 247
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 113, 131
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 2 cut(s) 301, 367
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 111, 138, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 2 cut(s) 301, 367
BseDI CCNNGG 3 cut(s) 111, 138, 203
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 256
BshFI GGCC 1 cut(s) 208
BshVI ATCGAT 2 cut(s) 301, 367
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 4 cut(s) 154, 193, 298, 364
BspACI CCGC 3 cut(s) 225, 308, 326
BspANI GGCC 1 cut(s) 208
BspDI ATCGAT 2 cut(s) 301, 367
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 4 cut(s) 149, 188, 201, 306
BssECI CCNNGG 3 cut(s) 111, 138, 203
BssMI GATC 4 cut(s) 154, 193, 298, 364
BssT1I CCWWGG 2 cut(s) 138, 203
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 292
BstKTI GATC 4 cut(s) 157, 196, 301, 367
BstMBI GATC 4 cut(s) 154, 193, 298, 364
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 111, 129
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Bsu15I ATCGAT 2 cut(s) 301, 367
BsuRI GGCC 1 cut(s) 208
BsuTUI ATCGAT 2 cut(s) 301, 367
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 104, 247
ClaI ATCGAT 2 cut(s) 301, 367
CviAII CATG 3 cut(s) 16, 295, 355
CviJI RGCY 3 cut(s) 208, 269, 290
CviKI_1 RGCY 3 cut(s) 208, 269, 290
DpnI GATC 4 cut(s) 156, 195, 300, 366
DpnII GATC 4 cut(s) 154, 193, 298, 364
DraIII CACNNNGTG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 2 cut(s) 323, 341
Eco130I CCWWGG 2 cut(s) 138, 203
Eco47I GGWCC 2 cut(s) 104, 247
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 138, 203
ErhI CCWWGG 2 cut(s) 138, 203
FaeI CATG 3 cut(s) 19, 298, 358
FaiI YATR 4 cut(s) 17, 42, 296, 356
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 3 cut(s) 15, 294, 354
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 2 cut(s) 189, 204
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 131
Hin1II CATG 3 cut(s) 19, 298, 358
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 316, 352
HpyCH4V TGCA 3 cut(s) 60, 118, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
Hsp92II CATG 3 cut(s) 19, 298, 358
Kzo9I GATC 4 cut(s) 154, 193, 298, 364
LpnPI CCDG 4 cut(s) 98, 125, 144, 171
MaeI CTAG 2 cut(s) 189, 204
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 156, 195, 300, 366
MboI GATC 4 cut(s) 154, 193, 298, 364
MboII GAAGA 7 cut(s) 155, 228, 243, 274, 287, 323, 341
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 34
MnlI CCTC 2 cut(s) 97, 325
MroXI GAANNNNTTC 1 cut(s) 29
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 113, 131
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 131
NdeII GATC 4 cut(s) 154, 193, 298, 364
NlaIII CATG 3 cut(s) 19, 298, 358
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 104, 247
PsuI RGATCY 1 cut(s) 193
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 154, 193, 298, 364
Sau96I GGNCC 2 cut(s) 104, 247
ScrFI CCNGG 2 cut(s) 113, 131
SetI ASST 1 cut(s) 292
SinI GGWCC 2 cut(s) 104, 247
Sse9I AATT 1 cut(s) 34
SsiI CCGC 3 cut(s) 225, 308, 326
SspMI CTAG 2 cut(s) 189, 204
StyD4I CCNGG 2 cut(s) 111, 129
StyI CCWWGG 2 cut(s) 138, 203
TaqI TCGA 3 cut(s) 162, 301, 367
TasI AATT 1 cut(s) 34
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 199
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 29, 32, 371
VpaK11BI GGWCC 2 cut(s) 104, 247
XmaJI CCTAGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 189, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.