pycom05g03000

regulation of auxin polar transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000705
Physical Location & Seq
Forward (+)
3489446 .. 3489868
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03000.1

Sequence Viewer

Length: 378 bp
ATGGAGAGCAGGTGGGTGTTATTTGAAGATCCACCACAGAGAGCTCCTACACCGGTGTTCGGAACTGCATCCTTAGCTGCAGATATGGATGAAGATGGATCTCCAACCATTCAACAAACAAGGGTAGAAAATCCGTCTTCGGGTGAAGGTTCCATACCTAGGGCTATGGGACGAAACAAGGTGCGAAGGTTGAAGGAAAAGGGTAAGGAAAATGATGATTACACCGCTCAACATGAAGTGGCGGCCTCATTGCGATTATTGGCGGAGCAAAATGCCCTTGAGGCGGAAGAAAGGAAGTGTAGGCATGAAGAACGGGCCAAACAAATACAAGAAGAGATGGATGATAAGAATATAGAAAGGAACACTCGAACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

5.17

Isoelectric Point (pI)

57.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 227
AciI CCGC 4 cut(s) 225, 242, 263, 284
AclWI GGATC 2 cut(s) 23, 106
AfiI CCNNNNNNNGG 4 cut(s) 59, 140, 159, 283
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 26, 113, 193
AluBI AGCT 2 cut(s) 44, 77
AluI AGCT 2 cut(s) 44, 77
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 2 cut(s) 23, 106
AoxI GGCC 2 cut(s) 243, 315
ApeKI GCWGC 1 cut(s) 77
AsiGI ACCGGT 1 cut(s) 52
AspA2I CCTAGG 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 155
AvrII CCTAGG 1 cut(s) 158
BanII GRGCYC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 138, 170
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 89, 331
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 2 cut(s) 78, 243
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 2 cut(s) 79, 244
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 59, 140, 159, 283
Bse118I RCCGGY 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 3 cut(s) 68, 94, 346
BseLI CCNNNNNNNGG 4 cut(s) 59, 140, 159, 283
BseMI GCAATG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 2 cut(s) 245, 317
BshTI ACCGGT 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 4 cut(s) 59, 140, 159, 283
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 245, 317
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 28, 98
BspACI CCGC 4 cut(s) 225, 242, 263, 284
BspANI GGCC 2 cut(s) 245, 317
BspLI GGNNCC 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 82
BspPI GGATC 2 cut(s) 23, 106
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 2 cut(s) 28, 98
BssT1I CCWWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 3 cut(s) 68, 94, 346
BstKTI GATC 2 cut(s) 31, 101
BstMBI GATC 2 cut(s) 28, 98
BstMWI GCNNNNNNNGC 2 cut(s) 74, 281
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 2 cut(s) 28, 98
BstYI RGATCY 2 cut(s) 28, 98
BsuRI GGCC 2 cut(s) 245, 317
BtsCI GGATG 3 cut(s) 68, 94, 346
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 315
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 2 cut(s) 233, 305
CviJI RGCY 5 cut(s) 44, 77, 164, 245, 317
CviKI_1 RGCY 5 cut(s) 44, 77, 164, 245, 317
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 30, 100
DpnII GATC 2 cut(s) 28, 98
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 2 cut(s) 278, 299
Ecl136II GAGCTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 236, 308
FaiI YATR 6 cut(s) 86, 155, 167, 234, 306, 353
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 232, 304
Fnu4HI GCNGC 2 cut(s) 78, 243
FokI GGATG 3 cut(s) 55, 101, 353
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 78, 243
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 78, 243
HaeIII GGCC 2 cut(s) 245, 317
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 236, 308
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 140, 180, 187
HpyCH4V TGCA 2 cut(s) 68, 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 281
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 2 cut(s) 236, 308
Kzo9I GATC 2 cut(s) 28, 98
LmnI GCTCC 2 cut(s) 49, 265
LpnPI CCDG 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 159
MalI GATC 2 cut(s) 30, 100
MbiI CCGCTC 1 cut(s) 227
MboI GATC 2 cut(s) 28, 98
MboII GAAGA 6 cut(s) 38, 104, 129, 299, 320, 344
MflI RGATCY 2 cut(s) 28, 98
MhlI GDGCHC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 2 cut(s) 256, 274
MspI CCGG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 74, 281
NdeII GATC 2 cut(s) 28, 98
NlaIII CATG 2 cut(s) 236, 308
NlaIV GGNNCC 1 cut(s) 151
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 2 cut(s) 79, 244
Psp124BI GAGCTC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 2 cut(s) 28, 98
SacI GAGCTC 1 cut(s) 46
SatI GCNGC 2 cut(s) 78, 243
Sau3AI GATC 2 cut(s) 28, 98
Sau96I GGNCC 1 cut(s) 315
SduI GDGCHC 1 cut(s) 46
SetI ASST 7 cut(s) 14, 46, 79, 151, 160, 183, 191
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 78
SgrAI CRCCGGYG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 4 cut(s) 225, 242, 263, 284
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 46
StyI CCWWGG 1 cut(s) 158
TaqI TCGA 1 cut(s) 367
TauI GCSGC 1 cut(s) 245
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 105, 249, 321
TspGWI ACGGA 1 cut(s) 123
XmaJI CCTAGG 1 cut(s) 158
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.