Rmu_sc0007485.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007485.1
OG0000705
Physical Location & Seq
Reverse (-)
71005 .. 71659
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007485.1_g000021.1.cds

Sequence Viewer

Length: 402 bp
atgccaaaagaagatgaagctcttactattgcttatatcaaagtctcggaagatatggagaagggtaccaaccaatcaaaggaagggctttgggcacgaatccaacaaacatacttggagtattatgaaggcaccaaacttccgaagcaacgacaagccgagagtttctatagggacgactccagaggacaaccatttaagtttggtaattgttataatttgtgcaaagattgggtgacgtttcaagaacaatttggtccaacaccggttcaacgaaacacctcaatttctttggaggaggatgaggatcccattgaggattctcctacttcatgggagaagaaaaagcctggatgctgcagaattcatggaatcgagacaaggtgtccgaaactgtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.57

Weight (kDa)

5.14

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000705)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23932 FvH4_3g35672 FvH4_4g18641 FvH4_7g17721
malus_domestica MD03G1177400.v1.1 MD07G1181800.v1.1 MD08G1042000.v1.1 MD08G1109500.v1.1 MD10G1235600.v1.1 MD14G1015600.v1.1 MD17G1218600.v1.1
prunus_persica Prupe.3G094000_v2.0.a1 Prupe.4G233800_v2.0.a1
pyrus_communis pycom05g03000 pycom06g19840 pycom08g03390 pycom08g03420 pycom09g12380 pycom11g05900 pycom13g28390 pycom13g28400 pycom14g03000 pycom16g13550 pycom16g13560 pycom16g25710 pycom17g22320
rosa_chinensis RchiOBHm_Chr2g0111501 RchiOBHm_Chr3g0494851 RchiOBHm_Chr4g0406761 RchiOBHm_Chr6g0260681 RchiOBHm_Chr6g0298551
rosa_laevigata RLG00000002080 RLG00000002250 RLG00000002368 RLG00000012994 RLG00000017948 RLG00000022683
rosa_multiflora Rmu_sc0000441.1_g000135 Rmu_sc0000610.1_g000022 Rmu_sc0000861.1_g000009 Rmu_sc0000938.1_g000012 Rmu_sc0001551.1_g000021 Rmu_sc0001685.1_g000059 Rmu_sc0002132.1_g000058 Rmu_sc0002539.1_g000108 Rmu_sc0002856.1_g000004 Rmu_sc0002868.1_g000022 Rmu_sc0003642.1_g000004 Rmu_sc0005394.1_g000003 Rmu_sc0005742.1_g000002 Rmu_sc0006138.1_g000008 Rmu_sc0006320.1_g000009 Rmu_sc0006616.1_g000006 Rmu_sc0007485.1_g000021 Rmu_sc0008518.1_g000027 Rmu_sc0010999.1_g000017 Rmu_sc0011648.1_g000001 Rmu_sc0013558.1_g000009 Rmu_sc0013665.1_g000001 Rmu_sc0014762.1_g000006 Rmu_ssc0000050.1_g000057
rosa_roxburghii Rroxscaffold_1G00024040
rosa_samantha Rh1CG033000 Rh1CG207600 Rh6CG418600
rosa_wichuraiana Rw1G008980 Rw1G034040 Rw4G013350 Rw4G032310 Rw5G001190 Rw5G026320 Rw5G038830 Rw6G008970 Rw7G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
Acc65I GGTACC 1 cut(s) 65
AccB1I GGYRCC 2 cut(s) 65, 131
AclWI GGATC 2 cut(s) 302, 315
AcsI RAATTY 1 cut(s) 363
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 245, 272
AhdI GACNNNNNGTC 1 cut(s) 384
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 49, 371
AlwI GGATC 2 cut(s) 302, 315
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 97
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 2 cut(s) 65, 131
BbvI GCAGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 49, 371
BfmI CTRYAG 2 cut(s) 169, 358
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 257
BmeRI GACNNNNNGTC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 3 cut(s) 67, 133, 309
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 307, 359
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 344
BshNI GGYRCC 2 cut(s) 65, 131
BshTI ACCGGT 1 cut(s) 265
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 49, 371
BsmFI GGGAC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 67, 133, 309
BspMAI CTGCAG 1 cut(s) 362
BspPI GGATC 2 cut(s) 302, 315
BspT107I GGYRCC 2 cut(s) 65, 131
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 396
BstF5I GGATG 2 cut(s) 307, 359
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 49, 371
BstMBI GATC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 169, 358
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BtsCI GGATG 2 cut(s) 307, 359
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 66
CspAI ACCGGT 1 cut(s) 265
CviAII CATG 2 cut(s) 333, 368
CviJI RGCY 4 cut(s) 20, 88, 158, 349
CviKI_1 RGCY 4 cut(s) 20, 88, 158, 349
CviQI GTAC 1 cut(s) 66
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 2 cut(s) 336, 371
FaiI YATR 8 cut(s) 36, 56, 112, 126, 171, 216, 334, 369
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 332, 367
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 2 cut(s) 314, 366
Fsp4HI GCNGC 1 cut(s) 358
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 166
HapII CCGG 1 cut(s) 266
Hin1II CATG 2 cut(s) 336, 371
HinfI GANTC 4 cut(s) 99, 179, 320, 372
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 49, 144, 390
Hpy188III TCNNGA 3 cut(s) 183, 245, 376
HpyAV CCTTC 3 cut(s) 55, 77, 122
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 225, 360
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 2 cut(s) 336, 371
KpnI GGTACC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 4 cut(s) 196, 279, 336, 363
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 344
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 23, 62, 352
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 5 cut(s) 208, 217, 251, 285, 363
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 127, 284
MnlI CCTC 6 cut(s) 179, 289, 292, 292, 298, 310
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 336, 371
NlaIV GGNNCC 3 cut(s) 67, 133, 309
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 99, 320, 372
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 67, 133, 309
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 22, 242, 284, 386
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 2 cut(s) 169, 358
SinI GGWCC 1 cut(s) 257
Sse9I AATT 5 cut(s) 208, 217, 251, 285, 363
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 396
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 375
TasI AATT 5 cut(s) 208, 217, 251, 285, 363
TfiI GAWTC 3 cut(s) 99, 320, 372
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 30, 141, 321, 356
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.